View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17482_low_4 (Length: 236)
Name: NF17482_low_4
Description: NF17482
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17482_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 224
Target Start/End: Original strand, 652275 - 652482
Alignment:
| Q |
17 |
taattacagggaaaggagagtattgagagagttttggaaactttgaaggatgacggtcatattataaaagaaaacttccaaaactttagtcgggtctctg |
116 |
Q |
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| T |
652275 |
taattacagggaaaggagagtattgagagagttttggaaactttgaaggatgatggtcatattataaaagaaaacttccaaaactttagtcgggtctctg |
652374 |
T |
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| Q |
117 |
ttaggcggcttggtcgtctccttccagatgctcgctgggtaaacttctaaccttttattggaatttgttgataaaatttgtcttgtgctttggttctggc |
216 |
Q |
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| T |
652375 |
ttaggcggcttggtcgtctccttccagatgctcgctgggtaaacttctaaccttttattggaatttgtcgataaaatttgtcttgtgctttggttctggc |
652474 |
T |
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| Q |
217 |
agtataat |
224 |
Q |
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|||||||| |
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| T |
652475 |
agtataat |
652482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 224
Target Start/End: Original strand, 688186 - 688392
Alignment:
| Q |
18 |
aattacagggaaaggagagtattgagagagttttggaaactttgaaggatgacggtcatattataaaagaaaacttccaaaactttagtcgggtctctgt |
117 |
Q |
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||||| ||||||||||||| |||||||| |||||||||| ||| | || ||||||| | |||||||| || | |||| |||||||||||||||| || || |
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| T |
688186 |
aattatagggaaaggagagcattgagagggttttggaaaatttaacggctgacggttacattataaaggagagcttcgaaaactttagtcgggtttccgt |
688285 |
T |
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| Q |
118 |
taggcggcttggtcgtctccttccagatgctcgctgggtaaacttctaaccttttattggaatttgttgataaaatttgtcttgtgctttggttctggca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |||| ||| |||||||| ||||| |||||||| ||| |
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| T |
688286 |
taggcggcttggtcgtctccttccagatgctcgctgggtaaacttccaaccttttctctgaacttgtcaatataatttgtcctgtgcgttggttctagca |
688385 |
T |
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| Q |
218 |
gtataat |
224 |
Q |
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|||||| |
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| T |
688386 |
ctataat |
688392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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