View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17483_high_3 (Length: 275)
Name: NF17483_high_3
Description: NF17483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17483_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 9821761 - 9821535
Alignment:
| Q |
10 |
aagaatatgatattccaacaaatcttgatattttaaaggatgattgtgaagtggattttgttaggaaagatgtaccagatgatatctttgaaatgccttt |
109 |
Q |
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| T |
9821761 |
aagaatatgatattccaacaaatcttgatattttaaaggatgattgtgaagtggattttgttaggaaagatgtaccagatgatatctttgaaatgccttt |
9821662 |
T |
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| Q |
110 |
gtcagaactccacaagcaaaaagcaattgaaagtgatcacagtgacacgagtcttgaaagtgacgatgaaaccactgatgattctgatgattctagtact |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9821661 |
gtcagaactccacaagcaaaaagcaattgaaagtgatcatagtgacacgagtcttgaaagtgacgatgaaaccactgatgattctgatgattctagtact |
9821562 |
T |
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| Q |
210 |
gattaggcagtgtttacagtgtctttt |
236 |
Q |
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| T |
9821561 |
gattaggcagtgtttacagtgtctttt |
9821535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 7509284 - 7509100
Alignment:
| Q |
10 |
aagaatatgatattccaacaaatcttgatattttaaaggatgattgtgaagtggattttgttaggaaagatgtaccagatgatatctttgaaatgccttt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7509284 |
aagaatatgatattccaacaaatcttgatattttaaaggatgattgtgaagtggatttggttaggaaagatgtaccagatgatatctttgaaatgccttt |
7509185 |
T |
|
| Q |
110 |
gtcagaactccacaagcaaaaagcaattgaaagtgatcacagtgacacgagtcttgaaagtgacgatgaaaccactgatgattct |
194 |
Q |
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| T |
7509184 |
gtcagaactccacaagcaaaaagcaattgaaagtgatcacagtgacacaagtcttgaaagtgacgatgaaaccactgatgattct |
7509100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 19486798 - 19486570
Alignment:
| Q |
10 |
aagaatatgatattccaacaaatcttgatattttaaaggatgattgtgaagtggattttgttaggaaagatgtaccagatgatatctttgaaatgccttt |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19486798 |
aagaatatgatattccaacaaatcttgatattttaaaggatgattttgaagtggattttgttagaaaagatgtaccagatgatatctttgaaatgccttt |
19486699 |
T |
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| Q |
110 |
gtcagaactccacaagcaaaaagcaattgaaagtgatcacagtgacacgagtcttgaaagtgacgatgaaaccactgatgattctgatgattctagtact |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19486698 |
gtcagaactccacaagcaaaaagcaattgaaagtgatcacagtgacacgagtcttgaaagtgacgatgaaaccactgatgattctgatgattctagtact |
19486599 |
T |
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| Q |
210 |
gattaggcagtgtttacagtgtcttttaa |
238 |
Q |
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| T |
19486598 |
gattaggcagtgtttacagtgtcttttaa |
19486570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 20310917 - 20311144
Alignment:
| Q |
11 |
agaatatgatattccaacaaatcttgatattttaaaggatgattgtgaagtggattttgttaggaaagatgtaccagatgatatctttgaaatgcctttg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20310917 |
agaatatgatattccaacaaatcttgatattttaaaggatgattgtgaagtggatttggttaggaaagatgtatcagatgatatctttgaaatgcctttg |
20311016 |
T |
|
| Q |
111 |
tcagaactccacaagcaaaaagcaattgaaagtgatcacagtgacacgagtcttgaaagtgacgatgaaaccactgatgattctgatgattctagtactg |
210 |
Q |
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||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20311017 |
tcagaactccataagcaaaaagtaattgaaagtgatcacagtgacacgagtcttgaaagtgacgatgaaaccactgatgattctgatgattctagtactg |
20311116 |
T |
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| Q |
211 |
attaggcagtgtttacagtgtcttttaa |
238 |
Q |
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|||||| ||||||||||||||||||||| |
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| T |
20311117 |
attaggaagtgtttacagtgtcttttaa |
20311144 |
T |
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