View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17483_low_3 (Length: 453)
Name: NF17483_low_3
Description: NF17483
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17483_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Original strand, 48814566 - 48814986
Alignment:
| Q |
18 |
atcacaatgtccttgttcacaatgtctctattcctgcaaaaattccaaattaattagtataataatcaacttaccaagatcaattattagcaaatgtaca |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48814566 |
atcacaatgtccttgttcacaatgtctctattcctgcaaaaattccaaattaattagtataataatcaacttaccaagatcaattattagcaaatgtaca |
48814665 |
T |
|
| Q |
118 |
aatcaaatnnnnnnnnntcatactttttggtccaaacagctaatgtgtcttctccacggctatgatcaacatatagtccaccggcccatttttcagttct |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
48814666 |
aatcaaataaaaaaaa-tcatactttttggtccaaacagctaatgtgtcttctccacggctatgatcaacatatagtccaccagcccatttttcagttct |
48814764 |
T |
|
| Q |
218 |
attataaggtgtgacccaaacattataattagtaaatgcaccacgtatttgtggataatcatcttcggttagaagtggatgagctggaattgctgggatc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48814765 |
attataaggtgtgacccaaacattataattagtaaatgcaccacgtatttgtggataatcatcttcggttagaagtggatgagctggaattgctgggatc |
48814864 |
T |
|
| Q |
318 |
aaacggtatccaacgtcgtttccaacgatagnnnnnnngtttggattgacaattgcaagttcacctggggcaagccctaaagtaatttttgcatctgatt |
417 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48814865 |
aaacggtatccgacgtcgtttccaacgatagtttttttgtttggattgacaattgcaagttcacctggggcaagccctagagtaatttttgcatctgatt |
48814964 |
T |
|
| Q |
418 |
cagtcttagcaatttgagtctc |
439 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
48814965 |
cagtcttagcaatttgagtctc |
48814986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 48835776 - 48835356
Alignment:
| Q |
18 |
atcacaatgtccttgttcacaatgtctctattcctgcaaaaattccaaattaattagtataataatcaacttaccaagatcaattattagcaaatgtaca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||| | ||||| ||| |
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|
| T |
48835776 |
atcacaatgtccttgttcacaatgtctctgttcctgcaaaaattccaaattaatcagtataataatcaacttacttagatcaattaatttcaaattcaca |
48835677 |
T |
|
| Q |
118 |
aatcaaatnnnnnnnnntcatactttttggtccaaacagctaatgtgtcttctccacggctatgatcaacatatagtccaccggcccatttttcagttct |
217 |
Q |
| |
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|| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
48835676 |
aaaataa-attaagtaatcatactttttggtccaaacagctaatgtgtcatctccacggctatgatcaacataaagtccaccagcccatttttcagttct |
48835578 |
T |
|
| Q |
218 |
attataaggtgtgacccaaacattataattagtaaatgcaccacgtatttgtggataatcatcttcggttagaagtggatgagctggaattgctgggatc |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |
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|
| T |
48835577 |
attataaggtgcgacccaaacattataattagtaaatgcaccacgtatttgtggataatcatcttcagttaaaagtggatgagctggaattgctggaatc |
48835478 |
T |
|
| Q |
318 |
aaacggtatccaacgtcgtttccaacgatagnnnnnnngtttggattgacaattgcaagttcacctggggcaagccctaaagtaatttttgcatctgatt |
417 |
Q |
| |
|
|||||||||||||| || || ||||| | || ||||||||| |||| |||||||||||||||||||||||| | || |||||||||||||||| |
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|
| T |
48835477 |
aaacggtatccaacttcattaccaacaacagtttttttgtttggattaacaaatgcaagttcacctggggcaagcccaattgttatttttgcatctgatt |
48835378 |
T |
|
| Q |
418 |
cagtcttagcaatttgagtctc |
439 |
Q |
| |
|
| |||||| || |||||||||| |
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| T |
48835377 |
ctgtcttaacagtttgagtctc |
48835356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 138 - 328
Target Start/End: Original strand, 48788250 - 48788440
Alignment:
| Q |
138 |
tactttttggtccaaacagctaatgtgtcttctccacggctatgatcaacatatagtccaccggcccatttttcagttctattataaggtgtgacccaaa |
237 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
48788250 |
tactgtttggtccaaacagctaaagtgtcatctccacgactatgatcaacataaagtccaccagcccatttttcagttctattataaggtgtgatccaaa |
48788349 |
T |
|
| Q |
238 |
cattataattagtaaatgcaccacgtatttgtggataatcatcttcggttagaagtggatgagctggaattgctgggatcaaacggtatcc |
328 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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|
| T |
48788350 |
cattataattagtgaaagcaccacgtatttgtgggtaatcatcttcggttagaagtggatgagctggaattgccggaatcaaacggtatcc |
48788440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 138 - 343
Target Start/End: Original strand, 15824285 - 15824490
Alignment:
| Q |
138 |
tactttttggtccaaacagctaatgtgtcttctccacggctatgatcaacatatagtccaccggcccatttttcagttctattataaggtgtgacccaaa |
237 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
15824285 |
tactgtttggtccaaacagctaaagtgtcatctccacgactatgatcaacatagagtccaccagcccatttttcagttctattataaggtgtgacccaaa |
15824384 |
T |
|
| Q |
238 |
cattataattagtaaatgcaccacgtatttgtggataatcatcttcggttagaagtggatgagctggaattgctgggatcaaacggtatccaacgtcgtt |
337 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||||||||||| |||||||||| |||||| ||||||||||| |||||||||||||| | || ||| |
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|
| T |
15824385 |
cattataattggtaaatgcaccgcgtatttgcggataatcatcttcagttagaagtgaatgagcaggaattgctggaatcaaacggtatccgatgtggtt |
15824484 |
T |
|
| Q |
338 |
tccaac |
343 |
Q |
| |
|
|||||| |
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|
| T |
15824485 |
tccaac |
15824490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 48797853 - 48797918
Alignment:
| Q |
18 |
atcacaatgtccttgttcacaatgtctctattcctgcaaaaattccaaattaattagtataataat |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48797853 |
atcacaatgtccttgttcacaatgtctctattcctgcaaaaattccaaattaattagtataataat |
48797918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 48788133 - 48788172
Alignment:
| Q |
18 |
atcacaatgtccttgttcacaatgtctctattcctgcaaa |
57 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48788133 |
atcacaatgtccttgttcacaatgtttctattcctgcaaa |
48788172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 402 - 439
Target Start/End: Original strand, 15824549 - 15824586
Alignment:
| Q |
402 |
atttttgcatctgattcagtcttagcaatttgagtctc |
439 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
15824549 |
atttttgcatctgattcagtcttagcagtttgagtctc |
15824586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 15824213 - 15824248
Alignment:
| Q |
68 |
taattagtataataatcaacttaccaagatcaatta |
103 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| |
|
|
| T |
15824213 |
taattagtataataatcaacttactaagatcaatta |
15824248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 15824151 - 15824180
Alignment:
| Q |
24 |
atgtccttgttcacaatgtctctattcctg |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
15824151 |
atgtccttgttcacaatgtctctattcctg |
15824180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 439
Target Start/End: Original strand, 48788514 - 48788551
Alignment:
| Q |
402 |
atttttgcatctgattcagtcttagcaatttgagtctc |
439 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
48788514 |
atttttgcatctgattctgtcttagcagtttgagtctc |
48788551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 47103663 - 47103766
Alignment:
| Q |
177 |
ctatgatcaacatatagtccaccggcccatttttcagttctattataaggtgtgacccaaacattataattagtaaatgcaccacgtatttgtggataat |
276 |
Q |
| |
|
|||||||||||||||| ||| || |||||||| |||||| | || || ||||||||||| |||||||||||||| || ||||| | ||||||||||||| |
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|
| T |
47103663 |
ctatgatcaacatataatcctcctgcccatttctcagttttgttgtatggtgtgacccacacattataattagtgaaagcacctctaatttgtggataat |
47103762 |
T |
|
| Q |
277 |
catc |
280 |
Q |
| |
|
|||| |
|
|
| T |
47103763 |
catc |
47103766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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