View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17484_high_12 (Length: 361)
Name: NF17484_high_12
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17484_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 1117647 - 1117980
Alignment:
| Q |
1 |
caaaaacaaggatttgcaagtcggactgaaatgtgatattgtggagtccaatctgttgcacctgacggactgcttccaacaagcgaaaagcctctccttc |
100 |
Q |
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| T |
1117647 |
caaaaacaaggatttgcaagtcggactgaaacgtgatattgtggagtccaatctgttgcacctgacggactgcttccaacaagcgaaaagcctctccttc |
1117746 |
T |
|
| Q |
101 |
gtgaacaagcatttctagctgataacccaaatatactgaaacaggcgctccttgcccgtctctgatatgacatccgaagctattaatctccattgtgtga |
200 |
Q |
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| T |
1117747 |
gtgaacaagcatttctagctgataacccaaatatactgaaacaggcgctccttgcccgtctctgatatgacatccgaagctattaatctccattgtgcga |
1117846 |
T |
|
| Q |
201 |
tgaaaacttgcatcgacgttacataaataagctccatgaattagagaactatgttgtattatgtttccgctactactatcttcattcattatcattggca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| | |||||||||| |
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| T |
1117847 |
tgaaaacttgcatcgacgttacataaataagctccatgaattagagaactctgttgt-ttttgtttccgctactactatcttta-----tatcattggcc |
1117940 |
T |
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| Q |
301 |
ttgtgaactttgcatcactccagttatctcacagcctctg |
340 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
1117941 |
ttgtgaactttgcatcactccagttatctcacagcctctg |
1117980 |
T |
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