View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17484_high_14 (Length: 315)
Name: NF17484_high_14
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17484_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 11694389 - 11694672
Alignment:
| Q |
17 |
taggaagttgtttacatatctataagtgctaaaaactatttaatgtacttaaggagtgaatgaaactttataaattataaaatgctaaaacaatattcta |
116 |
Q |
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| T |
11694389 |
taggaagttgtttacatatctataagtgctaaaaactatttaatgtacttaaggagtgcatgaaactttataaattataaagtgctaaaatcatattcta |
11694488 |
T |
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| Q |
117 |
tttcttacatgtatacg-aaaaaatatggttaaaatagtcaaatttatctatggtttgattatcattcttttcatatatcttattgcaatgaatgttgat |
215 |
Q |
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| T |
11694489 |
tttcttacatgtatacggaaaaaatatggttgaaatagtcaaatttatttatggtttgattatcattcttttcatatatcttattggaatgaatgttgat |
11694588 |
T |
|
| Q |
216 |
ggtaagtcattttttctcattctcaaatttcgtgagttactttctgcataatgtttgatcccattttagtaacatccttttatt |
299 |
Q |
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| T |
11694589 |
ggtaagtcattttttctcattctcaaatttcgtgagttactttctgcataatgtttgatcccattttagtaacatccttttatt |
11694672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 28555913 - 28555868
Alignment:
| Q |
82 |
ctttataaattataaaatgctaaaacaatattctatttcttacatg |
127 |
Q |
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| T |
28555913 |
ctttataaattataaattgataaaaccatattctatttcttacatg |
28555868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 28551568 - 28551523
Alignment:
| Q |
82 |
ctttataaattataaaatgctaaaacaatattctatttcttacatg |
127 |
Q |
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| T |
28551568 |
ctttataaattataaagtgataaaaccatattctatttcatacatg |
28551523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 27259774 - 27259743
Alignment:
| Q |
199 |
ttgcaatgaatgttgatggtaagtcatttttt |
230 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
27259774 |
ttgcaatgaatgttgatggtaagtcatttttt |
27259743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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