View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17484_high_15 (Length: 287)
Name: NF17484_high_15
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17484_high_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 11 - 287
Target Start/End: Complemental strand, 41853256 - 41852980
Alignment:
| Q |
11 |
agaatattaaccaaacataaatatgttgcctacaacccataaacaagcaagtaatttagttaaaagcttattcaataggcgtttatcatataaaatacta |
110 |
Q |
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| T |
41853256 |
agaatattaaccaaacaaaaatatgttgtctacaacccataaacaagcaagtaatttagttaaaagcttattcaataggcgtttatcatataaaatacta |
41853157 |
T |
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| Q |
111 |
tgacattgctgttgaacaagtcaaacacacgattttgcaacaaactatgaagattaaaaagaaatataaatatgcacaactaaaaaaggtgacaacttca |
210 |
Q |
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| T |
41853156 |
tgacattgctgttgaacaagtcaaacacacgattttgcaacaaactatgaagattaaaaagaaatataaatatgcacaactaaaaaaggtgacaacttca |
41853057 |
T |
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| Q |
211 |
aatattcattaaaccagacagataatttaaagtagtattgatcagtcacattcacaccaaaagcctccacaaaagct |
287 |
Q |
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| T |
41853056 |
aatattcattaaaccagacatataatttaaagtagtattgatcagtcacattcacaccaaaagcctccacaaaagct |
41852980 |
T |
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