View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17484_high_16 (Length: 277)
Name: NF17484_high_16
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17484_high_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 38092215 - 38092467
Alignment:
| Q |
19 |
atgagttgttggattacaattgaatgagtcatcaaatgaaaatgatctattaggaaatgccctccacctgtttccatcaacccttcctttcatttttaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38092215 |
atgagttgttggattacaattgaatgagtcatcaaatgaaaatgatctattaggaaatgccctccacctgtttccatcaacccttcctttcatttttaaa |
38092314 |
T |
|
| Q |
119 |
acattttaagtcgatatagtgaatctttggtaat-agnnnnnnnnctaagtagatcttagtaatatagttaaataactgatatgcttatagatttacct- |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38092315 |
acattttaagtcgatatagtgaatctttgataataatttttttttctaagtagatcttagtaatatagttaaataactgatatgcttatagatttaccta |
38092414 |
T |
|
| Q |
217 |
-nnnnnnntgttggaacccaccaaagtccaaacactaagaaaaccagtattat |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38092415 |
aaaaaaaatgttggaacccaccaaagtccaaacactaagaaaaccagcattat |
38092467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University