View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17484_high_20 (Length: 236)
Name: NF17484_high_20
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17484_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 30711222 - 30711002
Alignment:
| Q |
1 |
tagctggcctcaatctcatttttactaacatagcatccatagttacttcttgcttttagaacaaaaatatagacacaaacttggtactaattttctaact |
100 |
Q |
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| T |
30711222 |
tagctggcctcaatctcattattactaacatagcatccatagttacttcttgcttttagaacaaaaatatagacacaaacttggtactaattttctaact |
30711123 |
T |
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| Q |
101 |
taacttatcttttagccaaaagatatagtgatcattggcacacaatgacttgcaggtgcaaaattacaccataaaatcaaagaaacatagtagtctacaa |
200 |
Q |
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| T |
30711122 |
caacttatcttttagccaaaagatatagtgatcattggcacacaatgacttgcaggtgcaaaattacaccataacatcaaagaaacatagtagtctacaa |
30711023 |
T |
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| Q |
201 |
tatatagcatattgttccaaa |
221 |
Q |
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| T |
30711022 |
tatatagcatattgttccaaa |
30711002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 171
Target Start/End: Complemental strand, 30725272 - 30725163
Alignment:
| Q |
61 |
acaaaaatatagacacaaacttggtactaattttctaacttaacttatcttttagccaaaagatatagtgatcattggcacacaatgacttgcaggtgca |
160 |
Q |
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||||||| ||| ||||||||||||||||||||| ||||||||||||||| ||| ||| | ||||||||| ||||| ||| ||||| |||||||||| || |
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| T |
30725272 |
acaaaaacataaacacaaacttggtactaatttactaacttaacttatc-tttggcctatagatatagtcgtcattagcagacaattacttgcaggtaca |
30725174 |
T |
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| Q |
161 |
aaattacacca |
171 |
Q |
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||||||||||| |
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| T |
30725173 |
aaattacacca |
30725163 |
T |
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