View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17484_high_23 (Length: 226)
Name: NF17484_high_23
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17484_high_23 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 11694090 - 11694299
Alignment:
| Q |
21 |
tatttataaaaccacttg-tggtaccagacttaattcaagttctacataacaaa---atgtaaaaatacaaagagtttataagggtgttacgctaggcat |
116 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11694090 |
tatttataaaaccattttatgataccagacttaattcaagttctacgtaacaaagtcatttaaaaatacaaagagtttataagggtgttacgctagacat |
11694189 |
T |
|
| Q |
117 |
aaagttcaaaactctatcagagaaaaaccttaaaacaattttaatttttccgttttaggcaagaaaggttataaaataatgaaaacttggtaaaataaga |
216 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
11694190 |
aaagttcaaaacattatcagagaaaaaccttaaaacaatcttaatttttccgttttagtcatgaaaggttataaaataataaaaacttggtaaaataaga |
11694289 |
T |
|
| Q |
217 |
ataaattctt |
226 |
Q |
| |
|
|||||||||| |
|
|
| T |
11694290 |
ataaattctt |
11694299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University