View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17484_high_3 (Length: 664)

Name: NF17484_high_3
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17484_high_3
NF17484_high_3
[»] chr3 (1 HSPs)
chr3 (18-658)||(40184522-40185159)


Alignment Details
Target: chr3 (Bit Score: 603; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 603; E-Value: 0
Query Start/End: Original strand, 18 - 658
Target Start/End: Original strand, 40184522 - 40185159
Alignment:
Q  18 caaccgtcgtttcctctccggtgaaagtaaatagtccgatcatcaacccaacttggccagccaccgtgatcaactactttgtatctgtgagttccgtcgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40184522 caaccgtcgtttcctctccggtgaaagtaaatagtccgatcatcaacccaacttggccagccaccgtgatcaactactttgtatctgtgagttccgtcgt 40184621  T
Q  118 gagtgaggaaaacgtagatgtctgtagtgagatcctctacttcaccggaccaaccattaccgccgtaagaagcaactgctgtccatttcccggtaggaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40184622 gagtgaggaaaacgtagatgtctgtagtgagatcctctacttcaccggaccaaccattaccgccgtaagaagcaactgctgtccatttcccggtaggaga 40184721  T
Q  218 tacggctgggctgaaatcagcgacgccgtatggagtgagtcttcgggtgttacccgatttaagatgggtggaataaacggcagtccagctgacacgttgc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40184722 tacggctgggctgaaatcagcgacgccgtatggagtgagtcttcgggtgttacccgatttaagatgggtggaataaacggcggtccagctgacacgttgc 40184821  T
Q  318 acaccgggatcctcgtgggttgacacgtagattaaatattcaccgtcgctggataaacttggtttatctttgattgaaagttgagactgtgtttctgtga 417  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  40184822 acaccgggatcctcgtgggttgacacgtagattaaatattgaccgtcgctggataaacttggtttatctttgattgaaagttgagactgtgtttgagtga 40184921  T
Q  418 ggtgattaggtaacagtggaagttgaatcctatcattgattttggtggtggttgtgtaaacagcgtcgtagtatatggttggaaaaccggttctctcagt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40184922 ggtgattaggtaacagtggaagttgaatcctatcattgattttggtggtggttgtgtaaacggcgtcgtagtatatggttggaaaaccggttctctcagt 40185021  T
Q  518 aacgtaaacgagttgcagaggaggtggatcttggtgagtgaggagtttaatggatgtgagattgggaaggaattggccgttaaaattgacggagtgtccg 617  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40185022 aacgtaaacgagttgaagaggaggtggatcttggtgagtgaggagtttaatggatgtgagattgggaaggaattggccgttaaaattgacggagtgtccg 40185121  T
Q  618 tcagtgagttgtaattcttcttggtggtggtagtgatgatg 658  Q
    ||||||||||||||   ||||||||||||||||||||||||    
T  40185122 tcagtgagttgtaa---ttcttggtggtggtagtgatgatg 40185159  T

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