View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17484_high_6 (Length: 427)

Name: NF17484_high_6
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17484_high_6
NF17484_high_6
[»] chr2 (1 HSPs)
chr2 (13-407)||(42788924-42789321)
[»] chr8 (16 HSPs)
chr8 (133-263)||(5921391-5921521)
chr8 (133-263)||(5984811-5984941)
chr8 (133-263)||(5949283-5949413)
chr8 (268-401)||(5921160-5921293)
chr8 (139-263)||(5960549-5960673)
chr8 (268-401)||(5984580-5984713)
chr8 (268-341)||(5849851-5849924)
chr8 (268-401)||(5887188-5887321)
chr8 (268-401)||(5949052-5949185)
chr8 (272-355)||(5960363-5960446)
chr8 (268-341)||(5843109-5843182)
chr8 (139-263)||(5843315-5843442)
chr8 (139-263)||(5850057-5850184)
chr8 (128-233)||(5887533-5887638)
chr8 (145-211)||(41351576-41351642)
chr8 (274-337)||(39916637-39916700)
[»] chr7 (1 HSPs)
chr7 (269-329)||(45676080-45676140)
[»] chr5 (3 HSPs)
chr5 (277-324)||(2590849-2590896)
chr5 (274-324)||(1281333-1281383)
chr5 (148-246)||(2590599-2590697)
[»] chr4 (2 HSPs)
chr4 (228-335)||(24359805-24359912)
chr4 (263-326)||(43560551-43560614)
[»] chr3 (2 HSPs)
chr3 (274-324)||(44674039-44674089)
chr3 (260-329)||(34626700-34626769)
[»] chr1 (3 HSPs)
chr1 (274-324)||(16127411-16127461)
chr1 (277-330)||(37962871-37962924)
chr1 (178-206)||(38269785-38269813)


Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Complemental strand, 42789321 - 42788924
Alignment:
Q  13 tagggctaaacctataatacaacctacacctttcatcttttctattagtattcttattcaatatannnnnnnnnnnnnnnnnn---cttgatattattca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||                     ||||||||||||||    
T  42789321 tagggctaaacctataatacaacctacacctttcatcttttctattagtattctttttcaatataatcatcatcatcatcatcatccttgatattattca 42789222  T
Q  110 aagaaagtgagaagtacacaataatggggcatcactcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42789221 aagaaagtgagaagtacacaataatggggcatcactcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcat 42789122  T
Q  210 caactacatcactaattatggacatggttgttggagttctgtccctaaacttgcaggactgcagagatgtggaaaaagttgcaggttgagatggataaat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42789121 caactacatcactaattatggacatggttgttggagttctgtccctaaacttgcaggactgcagagatgtggaaaaagttgcaggttgagatggataaat 42789022  T
Q  310 tatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttattattgaacttcataccattctaggaaacaggtatatactata 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42789021 tatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttattattgaacttcataccattctaggaaacaggtatatactata 42788924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 5921521 - 5921391
Alignment:
Q  133 atggggcatcactcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatcaactacatcactaattatggac 232  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| || || || |  |||||||    
T  5921521 atgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatggac 5921422  T
Q  233 atggttgttggagttctgtccctaaacttgc 263  Q
    ||||||||||||||||||| || ||||||||    
T  5921421 atggttgttggagttctgttccaaaacttgc 5921391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 5984941 - 5984811
Alignment:
Q  133 atggggcatcactcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatcaactacatcactaattatggac 232  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| || || || |  |||||||    
T  5984941 atgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatggac 5984842  T
Q  233 atggttgttggagttctgtccctaaacttgc 263  Q
    ||||||||||||||||||| || ||||||||    
T  5984841 atggttgttggagttctgttccaaaacttgc 5984811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 5949413 - 5949283
Alignment:
Q  133 atggggcatcactcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatcaactacatcactaattatggac 232  Q
    ||||| ||||||||||| ||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| || |  || |  |||||||    
T  5949413 atgggacatcactcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatagtacaacatatggac 5949314  T
Q  233 atggttgttggagttctgtccctaaacttgc 263  Q
    ||||||||||||||||||| || ||||||||    
T  5949313 atggttgttggagttctgttccaaaacttgc 5949283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 268 - 401
Target Start/End: Complemental strand, 5921293 - 5921160
Alignment:
Q  268 ctgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttatta 367  Q
    ||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||  ||||||||||| || |||     
T  5921293 ctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagctgcactcattc 5921194  T
Q  368 ttgaacttcataccattctaggaaacaggtatat 401  Q
    | ||||| || | ||||||||| || ||||||||    
T  5921193 tagaactccacagcattctaggcaataggtatat 5921160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 139 - 263
Target Start/End: Complemental strand, 5960673 - 5960549
Alignment:
Q  139 catcactcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatcaactacatcactaattatggacatggtt 238  Q
    ||||| ||||| ||||| ||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| || || || |  |||||||||||||    
T  5960673 catcattcttgttgcaacaaacagaaggttaaaagaggattatggtcacctgaagaagatgaaaaactcatcaaatatattacaacatatggacatggtt 5960574  T
Q  239 gttggagttctgtccctaaacttgc 263  Q
    ||||||||||||| || ||||||||    
T  5960573 gttggagttctgttccaaaacttgc 5960549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 401
Target Start/End: Complemental strand, 5984713 - 5984580
Alignment:
Q  268 ctgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttatta 367  Q
    ||||||||||||||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||  || || |||     
T  5984713 ctgcagagatgtggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattg 5984614  T
Q  368 ttgaacttcataccattctaggaaacaggtatat 401  Q
    | ||||| || | ||||||||| || ||||||||    
T  5984613 tagaactacacaacattctaggcaataggtatat 5984580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 5849924 - 5849851
Alignment:
Q  268 ctgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagttt 341  Q
    ||||||||||||||||||||||| || || ||||||||||||||| ||||||||||||||||||||||||||||    
T  5849924 ctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagttt 5849851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 401
Target Start/End: Complemental strand, 5887321 - 5887188
Alignment:
Q  268 ctgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttatta 367  Q
    ||||||||||| ||||| |||||||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||  || || |||     
T  5887321 ctgcagagatgcggaaagagttgcagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattg 5887222  T
Q  368 ttgaacttcataccattctaggaaacaggtatat 401  Q
    | ||||| || | ||||||||| || ||||||||    
T  5887221 tagaactacacaacattctaggcaataggtatat 5887188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 401
Target Start/End: Complemental strand, 5949185 - 5949052
Alignment:
Q  268 ctgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaagctgctcttatta 367  Q
    ||||||||||||||||| ||||| || || ||||||||||||||| |||||||||||||||||||||||||||| ||||  |||||||  || || |||     
T  5949185 ctgcagagatgtggaaagagttgaagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcatcaagaagtagcactcattg 5949086  T
Q  368 ttgaacttcataccattctaggaaacaggtatat 401  Q
    | ||||| || | ||||||||| || ||||||||    
T  5949085 tagaactacacaacattctaggcaataggtatat 5949052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 272 - 355
Target Start/End: Complemental strand, 5960446 - 5960363
Alignment:
Q  272 agagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagtttttctccacaagaag 355  Q
    ||||||||||||| ||||| || || ||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  5960446 agagatgtggaaagagttgtagattaagatggataaattatctaagacctgatttgaaacgtggaagtttctctcaacaagaag 5960363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 268 - 341
Target Start/End: Complemental strand, 5843182 - 5843109
Alignment:
Q  268 ctgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaagttt 341  Q
    ||||||||||||||||||||||| || || ||||||||||||||| ||||||||||||| ||||||||||||||    
T  5843182 ctgcagagatgtggaaaaagttgtagattaagatggataaattatctaagacctgatttaaaacgtggaagttt 5843109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 139 - 263
Target Start/End: Complemental strand, 5843442 - 5843315
Alignment:
Q  139 catcactcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatcaactacatcactaattatggac---atg 235  Q
    |||||||||||||| |  ||  ||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||   ||     
T  5843442 catcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagatt 5843343  T
Q  236 gttgttggagttctgtccctaaacttgc 263  Q
    | || |||||||||||||| ||||||||    
T  5843342 gctgctggagttctgtcccaaaacttgc 5843315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 139 - 263
Target Start/End: Complemental strand, 5850184 - 5850057
Alignment:
Q  139 catcactcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatcaactacatcactaattatggac---atg 235  Q
    |||||||||||||| |  ||  ||||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||| | ||||||||   ||     
T  5850184 catcactcttgctgtagcaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaaactcatcaaatacatcacaacttatggacaagatt 5850085  T
Q  236 gttgttggagttctgtccctaaacttgc 263  Q
    | || |||||||||||||| ||||||||    
T  5850084 gctgctggagttctgtcccaaaacttgc 5850057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 128 - 233
Target Start/End: Complemental strand, 5887638 - 5887533
Alignment:
Q  128 caataatggggcatcactcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatcaactacatcactaatta 227  Q
    |||| ||||| |||||||||||||| || ||  ||||||| || ||||||||||||||||| |||||||||||||| |||||||| |||||||| | |||    
T  5887638 caatcatgggacatcactcttgctgtaacaaggagaaggtcaacagaggactatggtcacctgaagaagatgaaaagctcatcaaatacatcacaactta 5887539  T
Q  228 tggaca 233  Q
    ||||||    
T  5887538 tggaca 5887533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 41351642 - 41351576
Alignment:
Q  145 tcttgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatca 211  Q
    |||||||||||| |||||||||| || ||||| || ||||| || ||||||||||||||||||||||    
T  41351642 tcttgctgcaatcaacagaaggttaagagaggtctttggtcccctgaagaagatgaaaaactcatca 41351576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 39916637 - 39916700
Alignment:
Q  274 agatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaacgtggaa 337  Q
    |||||||||||||| ||||| ||||||||||| |||||| | ||||||||| | || |||||||    
T  39916637 agatgtggaaaaagctgcagattgagatggatcaattatctcagacctgatcttaagcgtggaa 39916700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 45676140 - 45676080
Alignment:
Q  269 tgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaa 329  Q
    ||||||| ||||| || ||||| || |||||||||||||||||| |||| |||||||||||    
T  45676140 tgcagaggtgtgggaagagttgtagattgagatggataaattatctaaggcctgatttgaa 45676080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 2590849 - 2590896
Alignment:
Q  277 tgtggaaaaagttgcaggttgagatggataaattatttaagacctgat 324  Q
    ||||| || ||||| |||||||||||||||||||||||||| ||||||    
T  2590849 tgtggtaagagttgtaggttgagatggataaattatttaaggcctgat 2590896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 1281333 - 1281383
Alignment:
Q  274 agatgtggaaaaagttgcaggttgagatggataaattatttaagacctgat 324  Q
    ||||||||||| ||||| ||||| ||||||| |||||||||||| ||||||    
T  1281333 agatgtggaaagagttgtaggttaagatggacaaattatttaagtcctgat 1281383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 246
Target Start/End: Original strand, 2590599 - 2590697
Alignment:
Q  148 tgctgcaataaacagaaggtgaaaagaggactatggtcaccagaagaagatgaaaaactcatcaactacatcactaattatggacatggttgttggagt 246  Q
    ||||| ||| |||||||||| || ||||| || |||||||| ||||||||||| |||||||| |  ||||| |||| | ||||  ||||||| ||||||    
T  2590599 tgctgtaatcaacagaaggttaagagaggcctttggtcacctgaagaagatgagaaactcattagatacattactactcatggttatggttgctggagt 2590697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 335
Target Start/End: Complemental strand, 24359912 - 24359805
Alignment:
Q  228 tggacatggttgttggagttctgtccctaaacttgcaggactgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttg 327  Q
    |||||| ||||||||||||  |||  ||| |  ||| ||| |||| ||||||||||||||||| ||||| |||||||| ||||| || || |||||| |     
T  24359912 tggacaaggttgttggagtgatgttgctagaaatgctggattgcaaagatgtggaaaaagttgtaggttaagatggatcaattacttgaggcctgatctt 24359813  T
Q  328 aaacgtgg 335  Q
    ||||||||    
T  24359812 aaacgtgg 24359805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 326
Target Start/End: Complemental strand, 43560614 - 43560551
Alignment:
Q  263 caggactgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgattt 326  Q
    ||||||| || ||||||||||| ||||| || |||||||||||||| ||||| || ||||||||    
T  43560614 caggacttcaaagatgtggaaagagttgtagattgagatggataaactatttgaggcctgattt 43560551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 44674039 - 44674089
Alignment:
Q  274 agatgtggaaaaagttgcaggttgagatggataaattatttaagacctgat 324  Q
    |||||||| || |||||||| |||||||||||||||||  |||||||||||    
T  44674039 agatgtggcaagagttgcagattgagatggataaattacctaagacctgat 44674089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 34626769 - 34626700
Alignment:
Q  260 ttgcaggactgcagagatgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaa 329  Q
    |||||||  |||| ||||||||||| ||||| || ||||||||||| || ||| | ||||||||||||||    
T  34626769 ttgcagggttgcaaagatgtggaaagagttgtagattgagatggatcaactatctgagacctgatttgaa 34626700  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 324
Target Start/End: Complemental strand, 16127461 - 16127411
Alignment:
Q  274 agatgtggaaaaagttgcaggttgagatggataaattatttaagacctgat 324  Q
    ||||||||||| ||||| || ||||||||||| |||||||||||| |||||    
T  16127461 agatgtggaaagagttgtagattgagatggattaattatttaagaactgat 16127411  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 330
Target Start/End: Original strand, 37962871 - 37962924
Alignment:
Q  277 tgtggaaaaagttgcaggttgagatggataaattatttaagacctgatttgaaa 330  Q
    ||||| || ||||||||||| |||||||||||||| || || ||||||||||||    
T  37962871 tgtgggaagagttgcaggttaagatggataaattacttgaggcctgatttgaaa 37962924  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 38269813 - 38269785
Alignment:
Q  178 ctatggtcaccagaagaagatgaaaaact 206  Q
    |||||||||||||||||||||||||||||    
T  38269813 ctatggtcaccagaagaagatgaaaaact 38269785  T

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