View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17484_high_9 (Length: 408)
Name: NF17484_high_9
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17484_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 12106047 - 12105667
Alignment:
| Q |
10 |
cttaattaataatactaatttaagggtccttcatcgacatttcaaaattgaccaacaaacctaaatcttgtctgccaatgcctgctacactaccgtttta |
109 |
Q |
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| T |
12106047 |
cttaattaataatactaatttaagggtccttcatcgacatttcaaaattgaccaacaaacctaaatcttgtctgccaatgcctgctacactaccgtttta |
12105948 |
T |
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| Q |
110 |
aaattaaccggttattcgttccttatgcagcaaataactaatgtcaataaaccaaatctgcaaaaagatcatgcaagtaaaaagctaaatcaattaagga |
209 |
Q |
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| T |
12105947 |
aaattaaccggttattcattccttatgcagcaaataactaatgtcaataaaccaaatcttcaaaaagatcatgcaagtaaaaagctaaatcaattaagga |
12105848 |
T |
|
| Q |
210 |
taaatttttcttaatttgtgcacaaagttcataaaatcagcaaatccaacaatctcatggtagcaactaatgaacaaatgacagaatagagaaactacta |
309 |
Q |
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| T |
12105847 |
taaatttttcttaatttgagcacaaagttcataaaatcagcaaatccaacaatctcatggtagcaactaatgaacaaatgacagaatagagaaactacta |
12105748 |
T |
|
| Q |
310 |
ctacttacataacgatattgaaagttattataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgt |
390 |
Q |
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| T |
12105747 |
ctacttacataacgatatttaaagttattataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaatcgt |
12105667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 10675992 - 10676046
Alignment:
| Q |
10 |
cttaattaataatactaatttaagggtccttcatcgacatttcaaaattgaccaa |
64 |
Q |
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| T |
10675992 |
cttaattaatgataataatttaagggtccttcactgacattgcaaaagtgaccaa |
10676046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 10116043 - 10116103
Alignment:
| Q |
171 |
aaaaagatcatgcaagtaaaaagctaaatcaattaaggataaatttttcttaatttgtgcaca |
233 |
Q |
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| T |
10116043 |
aaaaagatcatgcaagtaaaaa-ctaaatcaattaa-gatacatttttcttaatttgtgcaca |
10116103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 405225 - 405155
Alignment:
| Q |
29 |
ttaagggtccttcatcgacatttcaaaattgaccaacaaacctaaatcttgtctgccaatgcctgctacac |
99 |
Q |
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| T |
405225 |
ttaaggatccttcatccacatttcaaaaatgaccaaaaaaccaaaagcttgtctgcatatgcctactacac |
405155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 303
Target Start/End: Original strand, 957675 - 957728
Alignment:
| Q |
251 |
aaatccaacaatctcatggtagcaactaatg-aacaaatgacagaatagagaaa |
303 |
Q |
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|||||||||||| ||||||||| | |||||| |||||| ||||||||||||||| |
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| T |
957675 |
aaatccaacaatttcatggtagaagctaatgaaacaaaagacagaatagagaaa |
957728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 387
Target Start/End: Complemental strand, 410688 - 410640
Alignment:
| Q |
339 |
ataaattgaaagttgacatgttgcagaagctcttgaacacgaggttaat |
387 |
Q |
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||||||||||||||||||||||| |||||| |||| ||| |||| |||| |
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| T |
410688 |
ataaattgaaagttgacatgttgtagaagcccttggacatgaggataat |
410640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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