View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17484_low_1 (Length: 683)
Name: NF17484_low_1
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17484_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 50 - 348
Target Start/End: Original strand, 10343039 - 10343341
Alignment:
| Q |
50 |
tatgaattatgatcagtgacatgataatttattgattaagagaagtagatcacttagaggt------tatagttaatgttcacaagctggtggaatctct |
143 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
10343039 |
tatgaattatgatcagtgacatgataatttattgattaagagaagtagatcacttagaggtgagagttatagttaatgttcacaagctagtggaatctcc |
10343138 |
T |
|
| Q |
144 |
agcagaagaagcgtaattccccccactctccatcctcatcaagacgatgtcaacaacatgtcttcaatttcatcaacataatggcggaacaatagtcgta |
243 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||| |
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| T |
10343139 |
agcagaagaagcgtaattccccca--tctccatcctcatcaagacgatgtcaacaacatgtcttcaatttcattaacataatgatggaacaatagtggta |
10343236 |
T |
|
| Q |
244 |
acagtgtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctgcaaatgcaggaccaaataatactgcaacttagtctcaaatgaatag |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| || ||||| ||| |||||||||||||||| |
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| T |
10343237 |
acagtgtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctgcatgtgcaagaccaagtagcactgcgactcagtctcaaatgaatag |
10343336 |
T |
|
| Q |
344 |
tacta |
348 |
Q |
| |
|
||||| |
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|
| T |
10343337 |
tacta |
10343341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 341 - 664
Target Start/End: Original strand, 10343388 - 10343701
Alignment:
| Q |
341 |
tagtactacttggtcctgcgcctacatcaacaacttcatttattatgggttggttcaacatagttgaaataacattattaccactattgttacaccatga |
440 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10343388 |
tagtactatttggtcctgcgcctacatcaacaacttcatttattatgcgttggttcaacatagttgaaataacattattaccactattgttacaccatga |
10343487 |
T |
|
| Q |
441 |
tgttgatgaaatcaaaaaagatatgttgttgacattgttgacatcttcttgacgagaatgaagagt---aggaattatgcatcttctgctagaggttcca |
537 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |||||||||| | ||||||| |||| | |||| |||||||||||||| ||| |
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| T |
10343488 |
tgttgatgaaatcaaaaaagacatgttgttgaca------------tcttgacgaggacgaagagtaggaggagtcatgcgtcttctgctagagg-tccg |
10343574 |
T |
|
| Q |
538 |
tcaccttgtgaaccttgactagaactatcccctataggtgatctgtttctcttgattgataaattatcatgccaatgataatccttcatattacaactag |
637 |
Q |
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|| ||||| ||||||||||||||||| || | |||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
10343575 |
tcgccttgcgaaccttgactagaactctctcatataggtgatatatatctcttgattgataagttatcatgccaatgataatccttcatagtacaactag |
10343674 |
T |
|
| Q |
638 |
tactagtagtagtggtggtgttaattc |
664 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
10343675 |
tactagtagtagtggtggtgttaattc |
10343701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 339 - 590
Target Start/End: Original strand, 10181507 - 10181758
Alignment:
| Q |
339 |
aatagtactacttggtcctgcgcctacatcaacaacttcatttattatgggttggttcaacatagttgaaataacattattaccactattgttacaccat |
438 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||||||||| || ||| ||||||| |||||||||||||| || ||||||| ||| || | |||| |
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| T |
10181507 |
aatagtactacttggacctgcacctacagcaacaacttcattcatcatgtgttggtttaacatagttgaaatgacgctattaccgatatagtacctccat |
10181606 |
T |
|
| Q |
439 |
gatgttgatgaaatcaaaaaagatatgttgttgacattgttgacatcttcttgacgagaatgaagagt---aggaattatgcatcttctgctagaggttc |
535 |
Q |
| |
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|| |||||||||| ||| |||| | ||||||||||||||| |||||||||| ||| ||| ||||| |||||||| || ||||||||||||||||| |
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| T |
10181607 |
gaagttgatgaaactaaagaagaca---tgttgacattgttgatatcttcttgatgaggatggagagtaggaggaattacgcgtcttctgctagaggttc |
10181703 |
T |
|
| Q |
536 |
catcaccttgtgaaccttgactagaactatcccctataggtgatctgtttctctt |
590 |
Q |
| |
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||||| |||||||| ||||||||||||| || ||| | |||||||| ||||||| |
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|
| T |
10181704 |
catcagcttgtgaatcttgactagaactttctccttttggtgatctacttctctt |
10181758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 391 - 660
Target Start/End: Complemental strand, 10181372 - 10181106
Alignment:
| Q |
391 |
tggttcaacatagttgaaataacattattaccactattgttacaccatgatgttgatgaaatcaaaaaagatatgttgttgacattgttgacatcttctt |
490 |
Q |
| |
|
|||||||| ||| ||||||| ||| |||||||| ||||||| | |||||| | |||||||| || ||||||||||| |||||||||||||||| | |
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|
| T |
10181372 |
tggttcaatataattgaaatgacactattaccaatattgttcctccatgaagatgatgaaactgaagaagatatgttg---acattgttgacatcttgat |
10181276 |
T |
|
| Q |
491 |
gacgagaatgaagagtaggaattatgcatcttctgctagaggttccatcaccttgtgaaccttgactagaactatcccctataggtgatctgtttctctt |
590 |
Q |
| |
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|| || | || | || ||||| |||||||| |||| ||||||| || ||||||| |||||||| |||| || ||| |||||||||| ||||||| |
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| T |
10181275 |
gaggatagagagtaagagaaattacacatcttcttctagtggttccaccagtttgtgaatcttgactataactttctcctttaggtgatctacttctctt |
10181176 |
T |
|
| Q |
591 |
gattgataaattatcatgccaatgataatccttcatattacaactagtactagtagtagtggtggtgtta |
660 |
Q |
| |
|
|||||||||||||||| |||| |||| ||| |||||| ||| ||||||| || || |||||||||||||| |
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|
| T |
10181175 |
gattgataaattatcaggccactgatcatcattcatagtactactagtagtattattagtggtggtgtta |
10181106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 122 - 297
Target Start/End: Complemental strand, 10181717 - 10181533
Alignment:
| Q |
122 |
ttcacaagctggtggaatctctagcagaagaagcgtaattccccccactctccatcctcatcaagacgatgtcaa------caacatgtcttc---aatt |
212 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||| || |||||||||||||||||||| ||| |||| |||||||||||| | || |
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| T |
10181717 |
ttcacaagctgatggaacctctagcagaagacgcgtaattcctcctactctccatcctcatcaagaagatatcaacaatgtcaacatgtcttctttagtt |
10181618 |
T |
|
| Q |
213 |
tcatcaacataatggcggaacaatagtcgtaacagtgtcatttcatctatgtggaaccaacacatgatgattgaagttgttgctg |
297 |
Q |
| |
|
|||||||| | |||| || || ||| |||| || ||||||||| |||||| |||||||||||||||| |||||||||||||| |
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|
| T |
10181617 |
tcatcaacttcatggaggtactatatcggtaatagcgtcatttcaactatgttaaaccaacacatgatgaatgaagttgttgctg |
10181533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 187
Target Start/End: Original strand, 10181124 - 10181282
Alignment:
| Q |
35 |
tactactaatagtattatgaattatgatcagtgacatgataatttattgattaagagaagtagatcacttagag------gttatagttaatgttcacaa |
128 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||||| | ||||||||||| || |||||||||||||||| || || |||||||| || ||||||| |
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|
| T |
10181124 |
tactactagtagtactatgaatgatgatcagtggcctgataatttatcaatcaagagaagtagatcacctaaaggagaaagttatagtcaagattcacaa |
10181223 |
T |
|
| Q |
129 |
gctggtggaatctctagcagaagaagcgtaattccccccactctccatcctcatcaaga |
187 |
Q |
| |
|
||||||||| | |||| |||||| | |||||| | | |||||| ||||||||||||| |
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|
| T |
10181224 |
actggtggaaccactagaagaagatgtgtaatttctcttactctctatcctcatcaaga |
10181282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 475 - 657
Target Start/End: Complemental strand, 10343192 - 10343009
Alignment:
| Q |
475 |
ttgttgacatcttcttgacgagaatgaaga-gtaggaattatgcatcttctgctagaggttccatcaccttgtgaaccttgactagaactatcccctata |
573 |
Q |
| |
|
||||||||||| |||||| ||| ||| ||| | ||||||| || ||||||||| ||| ||||| | ||||||||| || |||| |||| || ||| || |
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|
| T |
10343192 |
ttgttgacatcgtcttgatgaggatggagatgggggaattacgcttcttctgctggagattccactagcttgtgaacattaactataactctcacctcta |
10343093 |
T |
|
| Q |
574 |
ggtgatctgtttctcttgattgataaattatcatgccaatgataatccttcatattacaactagtactagtagtagtggtggtg |
657 |
Q |
| |
|
||||||| ||||||| || ||||||||||||| || |||| || |||||| |||||||| ||||| ||||||| |||||| |
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|
| T |
10343092 |
agtgatctacttctcttaatcaataaattatcatgtcactgatcataattcatagtacaactactactaatagtagtagtggtg |
10343009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 189 - 337
Target Start/End: Complemental strand, 10343523 - 10343372
Alignment:
| Q |
189 |
gatgtcaacaacatgtcttca---atttcatcaacataatggcggaacaatagtcgtaacagtgtcatttcatctatgtggaaccaacacatgatgattg |
285 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| | ||||||||| |||| | ||| |||||| |||||| |||||||| ||| || | || |
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|
| T |
10343523 |
gatgtcaacaacatgtcttttttgatttcatcaacatcatggtgtaacaatagtggtaataatgttatttcaactatgttgaaccaacgcataataaatg |
10343424 |
T |
|
| Q |
286 |
aagttgttgctgcaaatgcaggaccaaataatactgcaacttagtctcaaat |
337 |
Q |
| |
|
||||||||| || | ||||||||||||| |||| | ||| ||||||||| |
|
|
| T |
10343423 |
aagttgttgatgtaggcgcaggaccaaatagtactactactctgtctcaaat |
10343372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 346 - 452
Target Start/End: Complemental strand, 10343309 - 10343203
Alignment:
| Q |
346 |
ctacttggtcctgcgcctacatcaacaacttcatttattatgggttggttcaacatagttgaaataacattattaccactattgttacaccatgatgttg |
445 |
Q |
| |
|
|||||||||| ||| | | || ||||||||||| | || ||| |||||||| |||||| |||||| ||| | |||||||||||||| || ||| ||||| |
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|
| T |
10343309 |
ctacttggtcttgcacatgcagcaacaacttcaatcatcatgtgttggttccacatagatgaaatgacactgttaccactattgttccatcattatgtta |
10343210 |
T |
|
| Q |
446 |
atgaaat |
452 |
Q |
| |
|
||||||| |
|
|
| T |
10343209 |
atgaaat |
10343203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 597 - 665
Target Start/End: Original strand, 10182201 - 10182269
Alignment:
| Q |
597 |
taaattatcatgccaatgataatccttcatattacaactagtactagtagtagtggtggtgttaattct |
665 |
Q |
| |
|
|||||||||||||| | ||| ||||||||| | | |||| || || |||||||||||||||||||||| |
|
|
| T |
10182201 |
taaattatcatgccgctaatattccttcatagtgctactactagtattagtagtggtggtgttaattct |
10182269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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