View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17484_low_12 (Length: 369)

Name: NF17484_low_12
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17484_low_12
NF17484_low_12
[»] chr5 (5 HSPs)
chr5 (107-361)||(6887639-6887893)
chr5 (141-361)||(6858577-6858794)
chr5 (18-108)||(6887921-6888011)
chr5 (18-106)||(37247627-37247715)
chr5 (289-361)||(6849186-6849258)
[»] chr4 (3 HSPs)
chr4 (18-108)||(21315533-21315623)
chr4 (18-106)||(46824606-46824694)
chr4 (18-71)||(16962285-16962338)
[»] chr8 (2 HSPs)
chr8 (18-108)||(20762739-20762829)
chr8 (18-105)||(27054391-27054477)
[»] scaffold0006 (1 HSPs)
scaffold0006 (18-104)||(75571-75657)
[»] chr7 (1 HSPs)
chr7 (18-101)||(6218240-6218323)
[»] chr1 (4 HSPs)
chr1 (19-72)||(24909027-24909080)
chr1 (23-72)||(24909123-24909172)
chr1 (44-105)||(9032434-9032495)
chr1 (26-80)||(43579048-43579102)
[»] chr2 (3 HSPs)
chr2 (18-108)||(11445498-11445588)
chr2 (43-106)||(5430286-5430349)
chr2 (32-80)||(42237555-42237603)
[»] chr6 (1 HSPs)
chr6 (32-108)||(9771917-9771993)


Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 107 - 361
Target Start/End: Complemental strand, 6887893 - 6887639
Alignment:
Q  107 gcaacctaaaccgcgacagttatttaaaaccttcttagctaaacatatgaaagattaaatttttagggcaaaaatgtaagaacctggaagatcggcgaga 206  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  6887893 gcaacctaaaccgcgacagttatttaaaacctttttagctaaacatatgaaagattaaatttttaggtcaaaaatgtaagaacctggaagatcggcgaga 6887794  T
Q  207 tgggccagaagggttaagagaaattggggatttagggttgttagaaggggttctgcgtgaaggtggggggttaggtttgagcttgagggaaagtgaaatg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6887793 tgggccagaagggttaagagaaattggggatttagggttgttagaaggggttctgcgtgaaggtggggggttaggtttgagcttgagggaaagtgaaatg 6887694  T
Q  307 tcgagaatacccaattttcccattctttcacgattttcacggattcgttcatctc 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6887693 tcgagaatacccaattttcccattctttcacgattttcacggattcgttcttctc 6887639  T

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Target: chr5; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 141 - 361
Target Start/End: Complemental strand, 6858794 - 6858577
Alignment:
Q  141 ttagctaaacatatgaaagattaaatttttagggcaaaaatgtaagaacctggaagatcggcgagatgggccagaagggttaagagaaattggggattta 240  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6858794 ttagctaaacatatgaaagattgaatttttagggcaaaaatggaagaacctggaagatcggcgagatgggccagaagggttgagagaaattggggattta 6858695  T
Q  241 gggttgttagaaggggttctgcgtgaaggtggggggttaggtttgagcttgagggaaagtgaaatgtcgagaatacccaattttcccattctttcacgat 340  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  6858694 gggttgttagaaggggttctgcgtgaaggt---gggttaggtttgagcttgagggaaagtgaaatgtcgagaatacccaattttcccattctttcgtgat 6858598  T
Q  341 tttcacggattcgttcatctc 361  Q
    |||| ||||||| ||| ||||    
T  6858597 tttcgcggattctttcttctc 6858577  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 6888011 - 6887921
Alignment:
Q  18 gatagaataaatgatttaagaatatttgtgcattgttgtgatgaattcacaccgcgaagaccgcaatcagtaaggcaacatccgtaacagc 108  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||    
T  6888011 gatagaataaatgatttaagaatatttgtgcattgttgtgatcaattcacaccgcgaagatcgcaatcagtaaagcaacatccgtaacagc 6887921  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 37247627 - 37247715
Alignment:
Q  18 gatagaataaatgatttaagaatatttgtgcattgttgtgatgaattcacaccgcgaagaccgcaatcagtaaggcaacatccgtaaca 106  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||  ||| ||||| |||| |||||||||||||||    
T  37247627 gatagaataaatgatttaataatatttgtgcattgttgtgattaattcacaccgcgacaaccacaatctgtaacgcaacatccgtaaca 37247715  T

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Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 289 - 361
Target Start/End: Complemental strand, 6849258 - 6849186
Alignment:
Q  289 ttgagggaaagtgaaatgtcgagaatacccaattttcccattctttcacgattttcacggattcgttcatctc 361  Q
    |||||||| || |||||||||| || |||||||||||||||||||||||||||||| ||||||| ||| ||||    
T  6849258 ttgagggagagcgaaatgtcgaaaagacccaattttcccattctttcacgattttctcggattctttcttctc 6849186  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 21315623 - 21315533
Alignment:
Q  18 gatagaataaatgatttaagaatatttgtgcattgttgtgatgaattcacaccgcgaagaccgcaatcagtaaggcaacatccgtaacagc 108  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||||||||||| ||||| |||| |||| |||||||||||||||||    
T  21315623 gatagaataaatgattaaataatatttgtgcattgttgtgattaattcacaccgcgacgaccgtaatctgtaatgcaacatccgtaacagc 21315533  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 46824694 - 46824606
Alignment:
Q  18 gatagaataaatgatttaagaatatttgtgcattgttgtgatgaattcacaccgcgaagaccgcaatcagtaaggcaacatccgtaaca 106  Q
    |||||||||||||||| || |||||||||||||||||||||| |||| ||||||||| || ||||||| |||| |||||||| ||||||    
T  46824694 gatagaataaatgattaaataatatttgtgcattgttgtgattaatttacaccgcgacgatcgcaatctgtaatgcaacatctgtaaca 46824606  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 16962285 - 16962338
Alignment:
Q  18 gatagaataaatgatttaagaatatttgtgcattgttgtgatgaattcacaccg 71  Q
    ||||||||||||||||||| |||||||||||||||| ||||| |||||| ||||    
T  16962285 gatagaataaatgatttaataatatttgtgcattgtcgtgattaattcataccg 16962338  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 20762829 - 20762739
Alignment:
Q  18 gatagaataaatgatttaagaatatttgtgcattgttgtgatgaattcacaccgcgaagaccgcaatcagtaaggcaacatccgtaacagc 108  Q
    ||||||||||| |||| ||  |||||||||||||||| |||| |||||||||||||| ||||||||||||||| |||||||||||||||||    
T  20762829 gatagaataaaagattaaatgatatttgtgcattgttctgattaattcacaccgcgacgaccgcaatcagtaacgcaacatccgtaacagc 20762739  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 27054477 - 27054391
Alignment:
Q  18 gatagaataaatgatttaagaatatttgtgcattgttgtgatgaattcacaccgcgaagaccgcaatcagtaaggcaacatccgtaac 105  Q
    ||||||||||||||||||| |||||||||| ||||||||||| |||| ||||||||| ||||||||||  ||| |||||||| |||||    
T  27054477 gatagaataaatgatttaataatatttgtggattgttgtgattaatt-acaccgcgatgaccgcaatctataacgcaacatctgtaac 27054391  T

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Target: scaffold0006 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 75571 - 75657
Alignment:
Q  18 gatagaataaatgatttaagaatatttgtgcattgttgtgatgaattcacaccgcgaagaccgcaatcagtaaggcaacatccgtaa 104  Q
    ||||||||||| |||| ||  |||||||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||| |||||    
T  75571 gatagaataaaagattaaatgatatttgtgcattgttctgattaattcacaccgcgacgaccgcaatcagtaacgcaacatacgtaa 75657  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 6218240 - 6218323
Alignment:
Q  18 gatagaataaatgatttaagaatatttgtgcattgttgtgatgaattcacaccgcgaagaccgcaatcagtaaggcaacatccg 101  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||   |||| |||| ||||| |||| ||||||||||    
T  6218240 gatagaataaatgatttaataatatttgtgcattgttgtgattaattcactttgcgacgaccacaatctgtaacgcaacatccg 6218323  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 24909027 - 24909080
Alignment:
Q  19 atagaataaatgatttaagaatatttgtgcattgttgtgatgaattcacaccgc 72  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  24909027 atagaataaatgatttaataatatttgtgcattgttgtgattaattcacaccgc 24909080  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 24909123 - 24909172
Alignment:
Q  23 aataaatgatttaagaatatttgtgcattgttgtgatgaattcacaccgc 72  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  24909123 aataaatgatttaataatatttgtgcattgttgtgattaattcacaccgc 24909172  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 9032495 - 9032434
Alignment:
Q  44 tgtgcattgttgtgatgaattcacaccgcgaagaccgcaatcagtaaggcaacatccgtaac 105  Q
    |||||| |||||| |  |||||||||||||| ||||||||||||||| |||| |||||||||    
T  9032495 tgtgcaatgttgttagtaattcacaccgcgacgaccgcaatcagtaacgcaatatccgtaac 9032434  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 43579048 - 43579102
Alignment:
Q  26 aaatgatttaagaatatttgtgcattgttgtgatgaattcacaccgcgaagaccg 80  Q
    |||||||| || |||||||||| ||||||||||| ||||||||||| || |||||    
T  43579048 aaatgattaaataatatttgtgtattgttgtgattaattcacaccgtgacgaccg 43579102  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 108
Target Start/End: Original strand, 11445498 - 11445588
Alignment:
Q  18 gatagaataaatgatttaagaatatttgtgcattgttgtgatgaattcacaccgcgaagaccgcaatcagtaaggcaacatccgtaacagc 108  Q
    ||||||||||||||||||| |||||| ||| ||||||||||| |||||||||||| | || ||||||| || |  |||||||| |||||||    
T  11445498 gatagaataaatgatttaataatattcgtggattgttgtgattaattcacaccgcaatgaacgcaatctgtgacacaacatccataacagc 11445588  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 5430286 - 5430349
Alignment:
Q  43 ttgtgcattgttgtgatgaattcacaccgcgaagaccgcaatcagtaaggcaacatccgtaaca 106  Q
    ||||||| | ||||||| ||||||||||||||  ||| ||||| |||| |||||||||||||||    
T  5430286 ttgtgcaatattgtgattaattcacaccgcgacaaccacaatctgtaatgcaacatccgtaaca 5430349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 42237603 - 42237555
Alignment:
Q  32 tttaagaatatttgtgcattgttgtgatgaattcacaccgcgaagaccg 80  Q
    ||||| || ||||||||| ||||||| | ||||||||||||||||||||    
T  42237603 tttaataagatttgtgcaatgttgtggttaattcacaccgcgaagaccg 42237555  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 9771917 - 9771993
Alignment:
Q  32 tttaagaatatttgtgcattgttgtgatgaattcacaccgcgaagaccgcaatcagtaaggcaacatccgtaacagc 108  Q
    ||||| || ||||||||| ||||||||| |||||||| ||||| |||| |||||  ||||||||||||| |||||||    
T  9771917 tttaataacatttgtgcaatgttgtgattaattcacaacgcgacgaccacaatccataaggcaacatccttaacagc 9771993  T

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