View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17484_low_14 (Length: 356)
Name: NF17484_low_14
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17484_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 20 - 334
Target Start/End: Original strand, 37174765 - 37175078
Alignment:
| Q |
20 |
tacctaacatgtgctcttaatgatcacatctacaaatcataaaacaaagtctattaattatcacaagattgttgaatgataggcttccaaatataaaatg |
119 |
Q |
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| T |
37174765 |
tacctaacatgtgctcttaataatcacatctacaaatcataaaacaaagtctattaattatcacaagattgttgaatgataggcttccaaatataaaatg |
37174864 |
T |
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| Q |
120 |
aggatgatttcttacatcctcctcctcaaaagttctagatctgcaattttttcttgagtaatttcaatatttgtgttgtgtttatgaattaattatatcc |
219 |
Q |
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| T |
37174865 |
aggatgatttcttacatcctcctcctcaaaagttctagatctgcaattttttcttgagtaatttcaatatttgtgttgtgtttatgaattaattatatcc |
37174964 |
T |
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| Q |
220 |
attacccaatagtttatgttacatcactttttatttatttttcaactacacaattatttccctcaaccatagtattnnnnnnnnntcaacacgcgcacat |
319 |
Q |
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| T |
37174965 |
attacccaatagtttatggtacatcactttttatttatttttcaactacacaattatgtccctcaaccatagtatt-aaaaaaaatcaacacgcgcacat |
37175063 |
T |
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| Q |
320 |
caaaaaggctatagt |
334 |
Q |
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||||||||||||||| |
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| T |
37175064 |
caaaaaggctatagt |
37175078 |
T |
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