View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17484_low_19 (Length: 267)
Name: NF17484_low_19
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17484_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 9247828 - 9247739
Alignment:
| Q |
1 |
attacatgcattttgcaacataagaagaaacaaaattagtttgtcagatgtgtggctgcaatgacagattgtccttgattgatcacgagg |
90 |
Q |
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| T |
9247828 |
attacatgcattttgcaacataagaagaaacaaaattagtttgtcagatgcgtggctgcaatgacagattgtccttgattgatcatgagg |
9247739 |
T |
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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 9247671 - 9247600
Alignment:
| Q |
158 |
accgtctttaaatgatgcagtgtgaaggtgtttggagtttctgcaaagtcaatgcagtgttcttatgatgat |
229 |
Q |
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| T |
9247671 |
accgtctttaaatgatgcagtgtgaaggtatttggagtttctgcaaagtcaatgcagtgttcttatgatgat |
9247600 |
T |
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