View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17484_low_2 (Length: 679)

Name: NF17484_low_2
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17484_low_2
NF17484_low_2
[»] chr3 (23 HSPs)
chr3 (103-660)||(763242-763799)
chr3 (409-660)||(9585122-9585376)
chr3 (103-379)||(9584775-9585056)
chr3 (9-106)||(762888-762985)
chr3 (341-604)||(13526474-13526737)
chr3 (558-650)||(783935-784030)
chr3 (18-98)||(9599343-9599423)
chr3 (565-609)||(9587328-9587372)
chr3 (565-608)||(1437864-1437907)
chr3 (566-609)||(43991827-43991870)
chr3 (202-240)||(2442260-2442298)
chr3 (201-240)||(783590-783629)
chr3 (573-608)||(2456106-2456141)
chr3 (567-602)||(2659297-2659332)
chr3 (199-234)||(12218278-12218313)
chr3 (197-240)||(13526841-13526884)
chr3 (566-608)||(771649-771691)
chr3 (555-609)||(14888745-14888799)
chr3 (199-232)||(989634-989667)
chr3 (200-233)||(43992212-43992245)
chr3 (201-245)||(1438225-1438269)
chr3 (202-234)||(1930955-1930987)
chr3 (206-246)||(3746229-3746269)
[»] chr2 (5 HSPs)
chr2 (572-609)||(33020180-33020217)
chr2 (566-609)||(33026521-33026564)
chr2 (566-609)||(33038018-33038061)
chr2 (575-608)||(7160913-7160946)
chr2 (199-232)||(36577635-36577668)
[»] chr7 (3 HSPs)
chr7 (567-608)||(27755555-27755596)
chr7 (568-608)||(24723213-24723253)
chr7 (199-231)||(1077952-1077984)
[»] scaffold0044 (1 HSPs)
scaffold0044 (411-609)||(89013-89211)
[»] chr6 (2 HSPs)
chr6 (199-238)||(9825298-9825337)
chr6 (199-233)||(9819612-9819646)
[»] chr1 (3 HSPs)
chr1 (565-608)||(51221347-51221390)
chr1 (411-479)||(51381438-51381506)
chr1 (565-609)||(51858467-51858511)
[»] scaffold1004 (1 HSPs)
scaffold1004 (565-609)||(2010-2054)
[»] scaffold0760 (1 HSPs)
scaffold0760 (565-609)||(4505-4549)
[»] chr5 (1 HSPs)
chr5 (199-231)||(1427476-1427508)
[»] chr4 (1 HSPs)
chr4 (205-233)||(22671928-22671956)


Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 103 - 660
Target Start/End: Original strand, 763242 - 763799
Alignment:
Q  103 taaggagaacaagcatgaaataaatgacattaataaaaggtaacataagttctagttgaatctcgcgataagtgactgaccataacatctaactaataac 202  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  763242 taaggagaacaagcatgaaataaataacattaataaaaggtaacataagttctagttgaatctcgcgataagtgactgaccataacatctaactaataac 763341  T
Q  203 attaagaacaaggtgatattaaactctcaacatagactgctggactgtaaaaaccattaattttttgacgcgctgacacattaaaagtaccacttttgga 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  763342 attaagaacaaggtgatattaaactctcaacatagactgctggactgtaaaaaccattaattttttgacgcgctgacatattaaaagtaccacttttgga 763441  T
Q  303 gtcatagacagtaaccatcaattcctcccaatgtttataataaattagcacttggtcatcctccgtgatatataaaggactgtcatagggatagagaccc 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||     
T  763442 gtcatagacagtaaccatcaattcctcccaatgtttataataaattagcacttggtcatcctccgtgatatataaaggaccgtcattgggatagagacca 763541  T
Q  403 tgaacttgcatgtaaggaacacggtacaatttattccgtggctcttcattatcatagtctttcataatccaaatatccacaaatgttttaaaacttgcaa 502  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  763542 tgaacttgcatgtaaggaacacggtacaatttattccatggctcttcattatcatagtctttcataatccaaatatccacaaatgttttaaaacttgcaa 763641  T
Q  503 tgatgtacaagcgatccatcaacaccctcaaggtccaactatttgtctccaaattaggctttaaaagcttttgatacgactccttctccaaatcaagaga 602  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  763642 tgatgtacaagcgatccatcaacgccctcaaggtccaactatttgtctccaaattaggctttaaaagcttttgatacgactccttctccaaatcaagaga 763741  T
Q  603 aacaatgttgtgcgaagaactactctcatgtgccaaccaattaatggtacctctagca 660  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  763742 aacaatgttgtgcgaagaactactctcatgtgccaaccaattaatggtacctctagca 763799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 409 - 660
Target Start/End: Original strand, 9585122 - 9585376
Alignment:
Q  409 tgcatgtaaggaacacggtacaatttattccgtggctcttcattatcatagtct-ttcataatccaaatatccacaaatgttttaaaacttgcaatgatg 507  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||||||| ||| |||||||||||||||||||||||| | |  |||| |||||  |||    
T  9585122 tgcatgtaaggaacacggtacaatttactccacggctcttcattatcata-tctcttcataatccaaatatccacaaatttctcgaaacgtgcaaatatg 9585220  T
Q  508 tacaagcgatccatcaacaccctcaaggtccaactatttgtctccaaattaggctttaaaagcttttgatacgactccttctccaaatcaagagaaacaa 607  Q
     |||||| ||||||  |  ||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9585221 cacaagcaatccatggattccctcaaggaccaactatctgtctccaaattaggcttcaaaagcttttgatacgactccttctccaaatcaagagaaacaa 9585320  T
Q  608 tgttgtgcgaagaact---actctcatgtgccaaccaattaatggtacctctagca 660  Q
    |||| || ||||||||   |   |||| ||||||||||||||||||||||||||||    
T  9585321 tgttatgtgaagaactctgagaatcatatgccaaccaattaatggtacctctagca 9585376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 103 - 379
Target Start/End: Original strand, 9584775 - 9585056
Alignment:
Q  103 taaggagaacaagcatgaaataaatgacattaataaaaggtaa-----cataagttctagttgaatctcgcgataagtgactgaccataacatctaacta 197  Q
    |||| ||||||||||| || ||||| ||| ||||||||| |||     |||||||| || | |||||||  |||||||||| ||||||||||||||| ||    
T  9584775 taagaagaacaagcataaactaaataacagtaataaaagctaagttaacataagttgtaatcgaatctccagataagtgacagaccataacatctaatta 9584874  T
Q  198 ataacattaagaacaaggtgatattaaactctcaacatagactgctggactgtaaaaaccattaattttttgacgcgctgacacattaaaagtaccactt 297  Q
    | ||||| ||| |||||||||||| |||||||| ||||||||| ||||| |  || |||||||||| | |||| || |||||| ||||||||||||||||    
T  9584875 acaacatcaaggacaaggtgatatcaaactctcgacatagacttctggattaaaataaccattaatgtcttgaggcactgacatattaaaagtaccactt 9584974  T
Q  298 ttggagtcatagacagtaaccatcaattcctcccaatgtttataataaattagcacttggtcatcctccgtgatatataaag 379  Q
    ||||| ||||||||||||| |||||||| | || ||| | ||||||| ||||||||||||||||||||||||||||||||||    
T  9584975 ttggaatcatagacagtaaacatcaattgcaccaaatttctataatacattagcacttggtcatcctccgtgatatataaag 9585056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 762888 - 762985
Alignment:
Q  9 cgaagaatataagtgattgaagaaagataaaagtgcagaatgatttagtggagggggaaacacctgatatatgtgtagtagttaacataataattaag 106  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  762888 cgaagcatataagtgattgaagaaagataaaagtgcagaatgatttagtggtgggggaaacacctgatatatgtgtagtagttaacataataattaag 762985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 341 - 604
Target Start/End: Complemental strand, 13526737 - 13526474
Alignment:
Q  341 aataaattagcacttggtcatcctccgtgatatataaaggactgtcatagggatagagaccctgaacttgcatgtaaggaacacggtacaatttattccg 440  Q
    |||| ||||||||||||||||| ||||| |||||||||||  ||  |||||||  |   ||| ||  |  ||||||||||||| | ||||||||  |||     
T  13526737 aatacattagcacttggtcatcttccgtaatatataaaggcgtgcaatagggacggtttccccgatataccatgtaaggaacatgatacaatttggtcca 13526638  T
Q  441 tggctcttcattatcatagtctttcataatccaaatatccacaaatgttttaaaacttgcaatgatgtacaagcgatccatcaacaccctcaaggtccaa 540  Q
    |||||  | |||  || | || ||||||||||||| |||||||||  | |||  |  |||||  ||| |||||| |||| ||||||||| ||| ||||||    
T  13526637 tggctggttatttccacattcattcataatccaaacatccacaaacatattagtatatgcaaatatggacaagcaatccttcaacacccccaaagtccaa 13526538  T
Q  541 ctatttgtctccaaattaggctttaaaagcttttgatacgactccttctccaaatcaagagaaa 604  Q
    | ||||||||| | |||||| |   |||||||||||||||| ||||| || |||||||||||||    
T  13526537 caatttgtctcaacattagggtgcgaaagcttttgatacgattccttttcaaaatcaagagaaa 13526474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 558 - 650
Target Start/End: Original strand, 783935 - 784030
Alignment:
Q  558 aggctttaaaagcttttgatacgactccttctccaaatcaagagaaacaatgttgtgcgaagaactact---ctcatgtgccaaccaattaatggt 650  Q
    |||||| ||||| |||||||||||||| ||||||||||||||||||||||||   ||| ||||||||||    |||| || |||||||||||||||    
T  783935 aggcttcaaaagattttgatacgactcattctccaaatcaagagaaacaatgacatgcaaagaactacttgcatcatatgtcaaccaattaatggt 784030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 9599343 - 9599423
Alignment:
Q  18 taagtgattgaagaaagataaaagtgcagaatgatttagtggagggggaaacacctgatatatgtgtagtagttaacataa 98  Q
    ||||||||||||||||||| |||   || ||||||||||||||||||||||||  ||||||| |||||| ||||| |||||    
T  9599343 taagtgattgaagaaagattaaacctcataatgatttagtggagggggaaacatatgatatacgtgtagcagttagcataa 9599423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 609
Target Start/End: Original strand, 9587328 - 9587372
Alignment:
Q  565 aaaagcttttgatacgactccttctccaaatcaagagaaacaatg 609  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  9587328 aaaagattttgatacgactcgttctccaaatcaagagaaacaatg 9587372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 565 - 608
Target Start/End: Complemental strand, 1437907 - 1437864
Alignment:
Q  565 aaaagcttttgatacgactccttctccaaatcaagagaaacaat 608  Q
    |||||||||||||||| ||||||||| |||||||||||||||||    
T  1437907 aaaagcttttgatacgtctccttctctaaatcaagagaaacaat 1437864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 566 - 609
Target Start/End: Complemental strand, 43991870 - 43991827
Alignment:
Q  566 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 609  Q
    ||||||||||||| |||||| |||||||||||||||||||||||    
T  43991870 aaagcttttgataagactccgtctccaaatcaagagaaacaatg 43991827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 2442298 - 2442260
Alignment:
Q  202 cattaagaacaaggtgatattaaactctcaacatagact 240  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  2442298 cattaagaacaaggtgatattaaactctcaacagagact 2442260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 783590 - 783629
Alignment:
Q  201 acattaagaacaaggtgatattaaactctcaacatagact 240  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  783590 acattaagaacaaggtgatatcaaactctcaacgtagact 783629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 608
Target Start/End: Complemental strand, 2456141 - 2456106
Alignment:
Q  573 ttgatacgactccttctccaaatcaagagaaacaat 608  Q
    |||||| |||||||||||||||||||||||||||||    
T  2456141 ttgatatgactccttctccaaatcaagagaaacaat 2456106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 602
Target Start/End: Original strand, 2659297 - 2659332
Alignment:
Q  567 aagcttttgatacgactccttctccaaatcaagaga 602  Q
    |||||||||||||||||||||||| |||||||||||    
T  2659297 aagcttttgatacgactccttctctaaatcaagaga 2659332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 12218313 - 12218278
Alignment:
Q  199 taacattaagaacaaggtgatattaaactctcaaca 234  Q
    ||||||||||||||||||||||| ||||||||||||    
T  12218313 taacattaagaacaaggtgatatcaaactctcaaca 12218278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 13526884 - 13526841
Alignment:
Q  197 aataacattaagaacaaggtgatattaaactctcaacatagact 240  Q
    |||||| |||||||||||||||||| ||||||||||| ||||||    
T  13526884 aataacgttaagaacaaggtgatatcaaactctcaacgtagact 13526841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 566 - 608
Target Start/End: Original strand, 771649 - 771691
Alignment:
Q  566 aaagcttttgatacgactccttctccaaatcaagagaaacaat 608  Q
    |||| |||||||| ||||| |||||||||||||||||||||||    
T  771649 aaagattttgatatgactcattctccaaatcaagagaaacaat 771691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 555 - 609
Target Start/End: Original strand, 14888745 - 14888799
Alignment:
Q  555 attaggctttaaaagcttttgatacgactccttctccaaatcaagagaaacaatg 609  Q
    ||||||||  ||||| |||||||||||||  ||||||||||||||||||| ||||    
T  14888745 attaggctgcaaaagattttgatacgacttgttctccaaatcaagagaaaaaatg 14888799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 989667 - 989634
Alignment:
Q  199 taacattaagaacaaggtgatattaaactctcaa 232  Q
    ||||||||| ||||||||||||||||||||||||    
T  989667 taacattaaaaacaaggtgatattaaactctcaa 989634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 43992245 - 43992212
Alignment:
Q  200 aacattaagaacaaggtgatattaaactctcaac 233  Q
    |||||||||||||||||||||| |||||||||||    
T  43992245 aacattaagaacaaggtgatatcaaactctcaac 43992212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 201 - 245
Target Start/End: Complemental strand, 1438269 - 1438225
Alignment:
Q  201 acattaagaacaaggtgatattaaactctcaacatagactgctgg 245  Q
    ||||||| ||||||||||||| ||||||||||| |||||| ||||    
T  1438269 acattaaaaacaaggtgatatcaaactctcaacgtagacttctgg 1438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 1930955 - 1930987
Alignment:
Q  202 cattaagaacaaggtgatattaaactctcaaca 234  Q
    |||||||||||||||||||| ||||||||||||    
T  1930955 cattaagaacaaggtgatatcaaactctcaaca 1930987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 3746269 - 3746229
Alignment:
Q  206 aagaacaaggtgatattaaactctcaacatagactgctgga 246  Q
    ||||||| ||||||||||||||||||||| ||||| |||||    
T  3746269 aagaacatggtgatattaaactctcaacacagacttctgga 3746229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 572 - 609
Target Start/End: Complemental strand, 33020217 - 33020180
Alignment:
Q  572 tttgatacgactccttctccaaatcaagagaaacaatg 609  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33020217 tttgatacgactccttctccaaatcaagagaaacaatg 33020180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 566 - 609
Target Start/End: Complemental strand, 33026564 - 33026521
Alignment:
Q  566 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 609  Q
    ||||| |||||||| |||||||||||||||||||||||||||||    
T  33026564 aaagcgtttgatacaactccttctccaaatcaagagaaacaatg 33026521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 566 - 609
Target Start/End: Complemental strand, 33038061 - 33038018
Alignment:
Q  566 aaagcttttgatacgactccttctccaaatcaagagaaacaatg 609  Q
    ||||| |||||||||| |||||||||||||||||||||||||||    
T  33038061 aaagcgtttgatacgattccttctccaaatcaagagaaacaatg 33038018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 575 - 608
Target Start/End: Original strand, 7160913 - 7160946
Alignment:
Q  575 gatacgactccttctccaaatcaagagaaacaat 608  Q
    |||| |||||||||||||||||||||||||||||    
T  7160913 gataagactccttctccaaatcaagagaaacaat 7160946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 36577668 - 36577635
Alignment:
Q  199 taacattaagaacaaggtgatattaaactctcaa 232  Q
    ||||||||||| ||||||||||||||||||||||    
T  36577668 taacattaagaccaaggtgatattaaactctcaa 36577635  T

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Target: chr7 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 567 - 608
Target Start/End: Complemental strand, 27755596 - 27755555
Alignment:
Q  567 aagcttttgatacgactccttctccaaatcaagagaaacaat 608  Q
    |||||||| |||| ||||||||||||||||||||||||||||    
T  27755596 aagcttttcatacaactccttctccaaatcaagagaaacaat 27755555  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 568 - 608
Target Start/End: Complemental strand, 24723253 - 24723213
Alignment:
Q  568 agcttttgatacgactccttctccaaatcaagagaaacaat 608  Q
    |||| |||||| |||||||||||||||||||||||||||||    
T  24723253 agctcttgataagactccttctccaaatcaagagaaacaat 24723213  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 1077952 - 1077984
Alignment:
Q  199 taacattaagaacaaggtgatattaaactctca 231  Q
    |||||||||||||| ||||||||||||||||||    
T  1077952 taacattaagaacatggtgatattaaactctca 1077984  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 411 - 609
Target Start/End: Complemental strand, 89211 - 89013
Alignment:
Q  411 catgtaaggaacacggtacaatttattccgtggctcttcattatcatagtctttcataatccaaatatccacaaatgttttaaaacttgcaatgatgtac 510  Q
    |||||||||||||  |||||||||| |||  | ||||| |||  |||| || ||||||| ||||||||| | |||| | | |  ||||| || |||| ||    
T  89211 catgtaaggaacattgtacaatttagtccaagactctttatttccatattccttcataacccaaatatcaaaaaatatatcactacttgtaaagatgcac 89112  T
Q  511 aagcgatccatcaacaccctcaaggtccaactatttgtct-ccaaattaggctttaaaagcttttgatacgactccttctccaaatcaagagaaacaatg 609  Q
    |||| |||| | ||||||| ||||||||| | | | || | |||||| ||| | |  |||||||| ||||||||| |||||||||||||| |||||||||    
T  89111 aagcaatccgttaacacccccaaggtcca-caactcgttttccaaatcaggatgtggaagctttttatacgactcattctccaaatcaagtgaaacaatg 89013  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 238
Target Start/End: Original strand, 9825298 - 9825337
Alignment:
Q  199 taacattaagaacaaggtgatattaaactctcaacataga 238  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  9825298 taacattaagaacaaggcgatatcaaactctcaacataga 9825337  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 233
Target Start/End: Original strand, 9819612 - 9819646
Alignment:
Q  199 taacattaagaacaaggtgatattaaactctcaac 233  Q
    ||||||||||||||||||||||| |||||||||||    
T  9819612 taacattaagaacaaggtgatatcaaactctcaac 9819646  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 608
Target Start/End: Original strand, 51221347 - 51221390
Alignment:
Q  565 aaaagcttttgatacgactccttctccaaatcaagagaaacaat 608  Q
    |||||||||||||| || ||||||| ||||||||||||||||||    
T  51221347 aaaagcttttgataggattccttcttcaaatcaagagaaacaat 51221390  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 411 - 479
Target Start/End: Original strand, 51381438 - 51381506
Alignment:
Q  411 catgtaaggaacacggtacaatttattccgtggctcttcattatcatagtctttcataatccaaatatc 479  Q
    ||||||||||| || | |||||||| |||  | |||||||||  |||| ||||||||||||||||||||    
T  51381438 catgtaaggaatactgaacaatttagtccaagactcttcatttccatattctttcataatccaaatatc 51381506  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 565 - 609
Target Start/End: Complemental strand, 51858511 - 51858467
Alignment:
Q  565 aaaagcttttgatacgactccttctccaaatcaagagaaacaatg 609  Q
    ||||||| |||| || |||| ||||||||||||||||||||||||    
T  51858511 aaaagctcttgacacaactcattctccaaatcaagagaaacaatg 51858467  T

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Target: scaffold1004 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 565 - 609
Target Start/End: Complemental strand, 2054 - 2010
Alignment:
Q  565 aaaagcttttgatacgactccttctccaaatcaagagaaacaatg 609  Q
    |||||||||||||| ||||| |||  |||||||||||||||||||    
T  2054 aaaagcttttgatatgactctttcgtcaaatcaagagaaacaatg 2010  T

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Target: scaffold0760 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 565 - 609
Target Start/End: Complemental strand, 4549 - 4505
Alignment:
Q  565 aaaagcttttgatacgactccttctccaaatcaagagaaacaatg 609  Q
    |||||||||||||| ||||| |||  |||||||||||||||||||    
T  4549 aaaagcttttgatatgactctttcgtcaaatcaagagaaacaatg 4505  T

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Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 1427476 - 1427508
Alignment:
Q  199 taacattaagaacaaggtgatattaaactctca 231  Q
    ||||| |||||||||||||||||||||||||||    
T  1427476 taacaataagaacaaggtgatattaaactctca 1427508  T

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Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 205 - 233
Target Start/End: Original strand, 22671928 - 22671956
Alignment:
Q  205 taagaacaaggtgatattaaactctcaac 233  Q
    |||||||||||||||||||||||||||||    
T  22671928 taagaacaaggtgatattaaactctcaac 22671956  T

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