View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17484_low_20 (Length: 248)

Name: NF17484_low_20
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17484_low_20
NF17484_low_20
[»] chr7 (6 HSPs)
chr7 (28-235)||(27232173-27232378)
chr7 (28-235)||(37106317-37106522)
chr7 (51-233)||(3941875-3942057)
chr7 (28-159)||(32239626-32239755)
chr7 (28-240)||(17608198-17608408)
chr7 (28-155)||(37401881-37402006)
[»] chr6 (7 HSPs)
chr6 (28-233)||(10962189-10962392)
chr6 (50-214)||(26644750-26644912)
chr6 (50-214)||(26750716-26750878)
chr6 (36-155)||(27925568-27925686)
chr6 (28-105)||(5641107-5641182)
chr6 (169-222)||(5641048-5641101)
chr6 (28-111)||(9951279-9951360)
[»] chr3 (4 HSPs)
chr3 (28-233)||(54393820-54394023)
chr3 (28-219)||(45714268-45714457)
chr3 (28-233)||(33439012-33439213)
chr3 (197-233)||(53530007-53530043)
[»] chr2 (8 HSPs)
chr2 (90-240)||(30711650-30711800)
chr2 (42-240)||(20204150-20204347)
chr2 (44-240)||(38409997-38410192)
chr2 (36-240)||(33475800-33476003)
chr2 (169-235)||(18053642-18053708)
chr2 (170-235)||(34116588-34116653)
chr2 (170-222)||(11027539-11027591)
chr2 (28-82)||(39689725-39689779)
[»] chr1 (10 HSPs)
chr1 (28-240)||(23916300-23916511)
chr1 (28-233)||(35810279-35810482)
chr1 (28-235)||(46265374-46265578)
chr1 (28-233)||(25125179-25125383)
chr1 (28-190)||(15662460-15662620)
chr1 (95-235)||(42916532-42916672)
chr1 (28-172)||(15014174-15014316)
chr1 (90-235)||(7595949-7596098)
chr1 (28-155)||(14578876-14579001)
chr1 (137-233)||(14770704-14770800)
[»] chr8 (5 HSPs)
chr8 (28-233)||(33280407-33280610)
chr8 (31-240)||(10750026-10750239)
chr8 (113-232)||(34515684-34515803)
chr8 (46-153)||(27189399-27189506)
chr8 (36-155)||(23180927-23181045)
[»] chr4 (8 HSPs)
chr4 (50-233)||(32398146-32398327)
chr4 (28-233)||(36156680-36156880)
chr4 (36-161)||(18990370-18990493)
chr4 (28-155)||(48340091-48340216)
chr4 (36-155)||(43812520-43812638)
chr4 (28-128)||(50147218-50147317)
chr4 (56-158)||(6874797-6874898)
chr4 (68-135)||(54742294-54742359)
[»] scaffold0224 (1 HSPs)
scaffold0224 (95-235)||(7726-7866)
[»] chr5 (3 HSPs)
chr5 (28-240)||(2675470-2675681)
chr5 (90-235)||(20191000-20191145)
chr5 (170-222)||(20188602-20188654)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 7e-67; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 27232378 - 27232173
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| | |||||||||||  |||||||| ||||||||||||||||||||| ||  |||||||||||||| |||||||||||||||||||||    
T  27232378 tcgtttgttcaaagcgcataactttaggcatggaaatgagtaaagccacttgaaccacgtat--ctcaaaagtcaaagaatttaaatttttgacacataa 27232281  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtctt 227  Q
    |||||||| ||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| | |||| ||||||||||| |||||||| |||    
T  27232280 atatattggaatttataccaatttttaatggactcgatgaagctattattacacttagtaattaacactggtatgtaaccaccaaatccagttttgcctt 27232181  T
Q  228 cttgtgtc 235  Q
    ||||||||    
T  27232180 cttgtgtc 27232173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 28 - 235
Target Start/End: Original strand, 37106317 - 37106522
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| | ||||||||||| ||||||||| ||||||||||||||||||||| ||  |||||||||||||| |||||||| ||||||||||||    
T  37106317 tcgtttgttcaaagcgcataactttaggtatggaaatgagtaaagccacttgaaccacgtat--ctcaaaagtcaaagaatttaaatgtttgacacataa 37106414  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtctt 227  Q
    |||||||| ||||||||| |||||||||||||||| |||| |||||||||||||||| |||||||||| | |||||||||||||||| |||||||| |||    
T  37106415 atatattggaatttataccaatttttaatggactcgatgaagctattattacacttaataattaacactggtatgcaaccaccaaatccagttttgcctt 37106514  T
Q  228 cttgtgtc 235  Q
    ||||||||    
T  37106515 cttgtgtc 37106522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 51 - 233
Target Start/End: Original strand, 3941875 - 3942057
Alignment:
Q  51 ttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaagga-tttaaatttttgacacataaa-tatattgaaatttatacaaa 148  Q
    |||| ||||||||| ||||||||| |||||||||||  |||||||||||||||| || ||||||||||| || |||||| ||||||| ||||||||| ||    
T  3941875 ttaggtatggaaataagtaaagccgcttgaaccacg--taactcaaaagtcaaaagaatttaaattttttacccataaaatatattggaatttataccaa 3941972  T
Q  149 tttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtcttcttgtg 233  Q
    ||||||||||||| || ||| |||||||||||| ||||||||||||  ||||||||||||||||||| | ||||| |||||||||    
T  3941973 tttttaatggactgaacgagactattattacacatagtaattaacatcgatatgcaaccaccaaattgaattttgccttcttgtg 3942057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 28 - 159
Target Start/End: Original strand, 32239626 - 32239755
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| ||||||||||||  |||| |||| |||||||||||||||||||||  ||||||||||||||||| ||||||||||||| | |||||    
T  32239626 tcgtttgttcaaagcacataactttaagtatgtaaatgagtaaagccacttgaaccacg--taactcaaaagtcaaagaatttaaatttttggcccataa 32239723  T
Q  128 atatattgaaatttatacaaatttttaatgga 159  Q
    |||||||||||||||||| |||||||||||||    
T  32239724 atatattgaaatttataccaatttttaatgga 32239755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 240
Target Start/End: Original strand, 17608198 - 17608408
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| ||| |||||||||||||| |||| ||||||| |||||||| ||||  ||||||||     |||  |||||||||||||||||||||    
T  17608198 tcgtttgttcaaagcacgtaactttagatatgaaaatgagtaaagtcacttgaaacacg--taactcaagtaaaaaaaaatttaaatttttgacacataa 17608295  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtctt 227  Q
    |||||||  ||||||||  | |||||||| ||||  ||||||||||||||| |  ||||||||||||| | |||||||||||||||| |||||||  |||    
T  17608296 atatatttgaatttatatcattttttaattgactggatgaggctattattatagatagtaattaacactggtatgcaaccaccaaatccagttttacctt 17608395  T
Q  228 cttgtgtcctatg 240  Q
    |||||||| ||||    
T  17608396 cttgtgtcatatg 17608408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 37402006 - 37401881
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| ||||||||||||| ||||||||| |||||| ||| |||||||  ||||| |||||||||||||  ||||||| |||||||||||||    
T  37402006 tcgtttgttcaaagcacataactttaggtatggaaatgagtaaaaccagttgaacc--gcatagctcaaaagtcaaaaaatttaaacttttgacacataa 37401909  T
Q  128 atatattgaaatttatacaaatttttaa 155  Q
    |||||||||||||||||| || ||||||    
T  37401908 atatattgaaatttataccaaattttaa 37401881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 10962392 - 10962189
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| ||||||||||||| |||| |||| |||||| |||||||||| |||  ||||||||||||||||  ||||||||||||||| |||||    
T  10962392 tcgtttgttcaaagcacataactttaggtatgaaaatgagtaaaaccacttgaacaacg--taactcaaaagtcaaataatttaaatttttgacccataa 10962295  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtctt 227  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||||||||||||| ||||| |||    
T  10962294 atatattgaaatttataccaatttttaatggactagatgaggctattattacacatagtaattaacactggtatgcaaccaccaaattcaattttgcctt 10962195  T
Q  228 cttgtg 233  Q
    ||||||    
T  10962194 cttgtg 10962189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 26644750 - 26644912
Alignment:
Q  50 tttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataaatatattgaaatttatacaaat 149  Q
    ||||||||||||||| ||||||||||||||||| ||  |||||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||| |||    
T  26644750 tttagatatggaaatgagtaaagccacttgaacgac--ataactcaaaagtcaaagaatttaaatttttgacccataaatatattagaatttataccaat 26644847  T
Q  150 ttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaat 214  Q
    |||||| |||||| |||||||||||||||||| || ||| |||||| | ||||||||||||||||    
T  26644848 ttttaaaggactcgatgaggctattattacacataataagtaacactggtatgcaaccaccaaat 26644912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 26750716 - 26750878
Alignment:
Q  50 tttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataaatatattgaaatttatacaaat 149  Q
    ||||||||||||||| ||||||||||||||||| ||  |||||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||| |||    
T  26750716 tttagatatggaaatgagtaaagccacttgaacgac--ataactcaaaagtcaaagaatttaaatttttgacccataaatatattagaatttataccaat 26750813  T
Q  150 ttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaat 214  Q
    |||||| |||||| |||||||||||||||||| || ||| |||||| | ||||||||||||||||    
T  26750814 ttttaaaggactcgatgaggctattattacacataataagtaacactggtatgcaaccaccaaat 26750878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 27925568 - 27925686
Alignment:
Q  36 tcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaagga-tttaaatttttgacacataaatatatt 134  Q
    ||||||||||||||||||  |||| |||| |||||||||||||||||||||  ||||||||||||||||| | ||||| ||||| | |||||||||||||    
T  27925568 tcaaaacacataactttaagtatgaaaatgagtaaagccacttgaaccacg--taactcaaaagtcaaagaattttaatttttttatacataaatatatt 27925665  T
Q  135 gaaatttatacaaatttttaa 155  Q
    | ||||||||| |||||||||    
T  27925666 ggaatttataccaatttttaa 27925686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 5641182 - 5641107
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaag 105  Q
    ||||||| ||||| ||||||||| |||||| |||||| |||| |  |||||||||||||  |||||||||||||||||    
T  5641182 tcgtttgttcaaagcacataactctagataaggaaatgagtagattcacttgaaccacg--taactcaaaagtcaaag 5641107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 5641101 - 5641048
Alignment:
Q  169 gctattattacacttagtaattaacacggatatgcaaccaccaaattcagtttt 222  Q
    ||||||||||||| | ||||||||||| | ||||||||||||| ||||||||||    
T  5641101 gctattattacacatggtaattaacaccggtatgcaaccaccagattcagtttt 5641048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 111
Target Start/End: Complemental strand, 9951360 - 9951279
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggattta 111  Q
    ||||||| ||||| | ||||||||||| || |||||| || |||| ||||||||| |||  ||||||||||||||||| |||||    
T  9951360 tcgtttgttcaaagcgcataactttaggtaaggaaatgagcaaagtcacttgaacaacg--taactcaaaagtcaaagaattta 9951279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 54394023 - 54393820
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| ||||||||||||| |||| |||| |||||||||| |||||||  |||||||||||||||||||| ||| ||||||||||| |||||    
T  54394023 tcgtttgttcaaagcacataactttaggtatgaaaatgagtaaagccatttgaacc--gcataactcaaaagtcaaagaattaaaatttttgacccataa 54393926  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtctt 227  Q
    ||||||||||||||||||||||||||||||||||  | |||||||||||| ||| ||||||||||||| | ||||||||||||||||  ||||||| |||    
T  54393925 atatattgaaatttatacaaatttttaatggactagacgaggctattattgcacatagtaattaacactggtatgcaaccaccaaatcaagttttgcctt 54393826  T
Q  228 cttgtg 233  Q
    ||||||    
T  54393825 cttgtg 54393820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 45714268 - 45714457
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| ||||||||||||| |||| |||| |||||| |||||||||| |||  ||||||||||||||||  ||| ||||||||||| |||||    
T  45714268 tcgtttgttcaaagcacataactttaggtatgaaaatgagtaaaaccacttgaacaacg--taactcaaaagtcaaataattcaaatttttgacccataa 45714365  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagt 219  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||||||||| |||||||||||||   |||||||||||||||| ||||    
T  45714366 atatattgaaatttataccaatttttaatggactagatgaggctattattacacatagtaattaacacttgtatgcaaccaccaaatccagt 45714457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 33439213 - 33439012
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| ||||||||||||| |||| |||| |||||| |||||||||  |||  ||||||||||||||||  ||| ||||||||||| |||||    
T  33439213 tcgtttgttcaaagcacataactttaggtatgaaaatgagtaaaaccacttgaataacg--taactcaaaagtcaaataattgaaatttttgacccataa 33439116  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtctt 227  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||||||||  ||||||||||||  | ||||||||||||| || ||||||||||||    
T  33439115 atatattgaaatttataccaatttttaatggactagatgaggctattattaca--tagtaattaacattggtatgcaaccaccagatccagttttgtctt 33439018  T
Q  228 cttgtg 233  Q
    ||||||    
T  33439017 cttgtg 33439012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 53530043 - 53530007
Alignment:
Q  197 gatatgcaaccaccaaattcagttttgtcttcttgtg 233  Q
    |||||||||||||||||| || |||||||||||||||    
T  53530043 gatatgcaaccaccaaatccaattttgtcttcttgtg 53530007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 90 - 240
Target Start/End: Original strand, 30711650 - 30711800
Alignment:
Q  90 aactcaaaagtcaaaggatttaaatttttgacacataaatatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaat 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  30711650 aactcaaaagtcaaaggatttaaatttttgacacataaatatattgtaatttataccaatttttaatggactcgatgaggctattattacacttagtaat 30711749  T
Q  190 taacacggatatgcaaccaccaaattcagttttgtcttcttgtgtcctatg 240  Q
    |||||  | ||||||||||||||||||| ||||||||||||||||| ||||    
T  30711750 taacagtggtatgcaaccaccaaattcaattttgtcttcttgtgtcatatg 30711800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 42 - 240
Target Start/End: Complemental strand, 20204347 - 20204150
Alignment:
Q  42 cacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataaa-tatattgaaatt 140  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||  |||| |||||||||||  ||||||||||||||| |||||| ||||||||||||    
T  20204347 cacataactttaggtatggaaataagtaaagccacttgaaccacg--taacacaaaagtcaaataatttaaatttttgacccataaaatatattgaaatt 20204250  T
Q  141 tatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtcttcttgtgtcctatg 240  Q
    ||||| ||||||||||| |||  | || ||||||||| ||| ||||||||||||  | ||||||||||||||||||| ||||| ||||||||||| ||||    
T  20204249 tataccaatttttaatgaactggacgaagctattattgcacatagtaattaacagtggtatgcaaccaccaaattcaattttgccttcttgtgtcatatg 20204150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 44 - 240
Target Start/End: Complemental strand, 38410192 - 38409997
Alignment:
Q  44 cataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataaa-tatattgaaattta 142  Q
    ||||||||||| | ||||||| ||||||||||||||||| ||   ||||||||||||||||| |||||||||||| || | |||| ||||||||||||||    
T  38410192 cataactttaggtgtggaaataagtaaagccacttgaacgact--taactcaaaagtcaaagaatttaaattttttacccgtaaaatatattgaaattta 38410095  T
Q  143 tacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtcttcttgtgtcctatg 240  Q
    ||| |||||||||||||||  | ||| |||||||||||| ||||||||||||  | ||||||||||||||||  | ||||| ||||||||||| ||||    
T  38410094 taccaatttttaatggactgtacgagactattattacacatagtaattaacatcggtatgcaaccaccaaatcaaattttgccttcttgtgtcatatg 38409997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 33475800 - 33476003
Alignment:
Q  36 tcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgac-acataaatatatt 134  Q
    |||||||||||||||||||  || |||||  | ||||||||||||||||||  ||||||||||||||||| |||||||      |  ||| |||||||||    
T  33475800 tcaaaacacataactttaggcatagaaatgggaaaagccacttgaaccacg--taactcaaaagtcaaagaatttaaaaaaaaaattacacaaatatatt 33475897  T
Q  135 gaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtcttcttgtgt 234  Q
    | || |||| | ||||||||||||||| |||||| |||||| ||||| ||||||||||||| | | |||||||||||||| ||||| |  ||||||||||    
T  33475898 ggaacttatgccaatttttaatggactgaatgagactattactacacatagtaattaacactggtgtgcaaccaccaaatccagttctcccttcttgtgt 33475997  T
Q  235 cctatg 240  Q
    | ||||    
T  33475998 catatg 33476003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 18053642 - 18053708
Alignment:
Q  169 gctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtcttcttgtgtc 235  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||  |||||||||||||| ||||    
T  18053642 gctattattacacatagtaattaacaccgatatgcaaccaccaaatctagttttgtcttcttatgtc 18053708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 34116653 - 34116588
Alignment:
Q  170 ctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtcttcttgtgtc 235  Q
    ||||||||||||||||||||||||   | |||||||||||||||| || |||||||||||||||||    
T  34116653 ctattattacacttagtaattaactttggtatgcaaccaccaaatccaattttgtcttcttgtgtc 34116588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 11027539 - 11027591
Alignment:
Q  170 ctattattacacttagtaattaacacggatatgcaaccaccaaattcagtttt 222  Q
    |||||||||||| | ||||||||||| | |||||||||||||||| |||||||    
T  11027539 ctattattacacatggtaattaacaccggtatgcaaccaccaaatccagtttt 11027591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 39689725 - 39689779
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaac 82  Q
    |||||||||||||  |||||||| ||| ||||||||| ||||||| |||||||||    
T  39689725 tcgtttgatcaaagtacataactctaggtatggaaatgagtaaagtcacttgaac 39689779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 240
Target Start/End: Original strand, 23916300 - 23916511
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||||||| ||||||||| ||||||||| |||||| |||| ||||||||  |||||||||||||||||| ||||||||||||||| |||||    
T  23916300 tcgtttgttcaaaacacgtaactttaggtatggaaatgagtaaaaccacatgaaccac--ataactcaaaagtcaaagaatttaaatttttgacccataa 23916397  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggctatta-ttacacttagtaattaacacggatatgcaaccaccaaattcagttttgtct 226  Q
    |||||||| ||||||||| ||||||||||||||   |||||||||||| |||||| ||||||||||||| | |||||||||||||||| ||||||| |||    
T  23916398 atatattggaatttataccaatttttaatggacaagatgaggctattatttacacatagtaattaacacaggtatgcaaccaccaaatccagttttttct 23916497  T
Q  227 tcttgtgtcctatg 240  Q
    | | ||||| ||||    
T  23916498 tatcgtgtcatatg 23916511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 35810279 - 35810482
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| || |||||||||| |||| |||| |||||||||| ||||||||||  ||||||||||||||||| ||| ||||||||||| |||||    
T  35810279 tcgtttgttcaaagcaaataactttaggtatgaaaatgagtaaagccatttgaaccacg--taactcaaaagtcaaagaattaaaatttttgacccataa 35810376  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtctt 227  Q
    |||||||| |||||||||||||||||||||||||  | |||||||||||| ||| ||||||||||||| | |||||||||||||||| |||||||| |||    
T  35810377 atatattggaatttatacaaatttttaatggactagacgaggctattattgcacatagtaattaacactggtatgcaaccaccaaatccagttttgcctt 35810476  T
Q  228 cttgtg 233  Q
    | ||||    
T  35810477 cctgtg 35810482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 46265578 - 46265374
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| | |||||||||   |||| |||| ||||||||||||||||| ||| |  ||| ||||||||||  |||||||||||||||||||||    
T  46265578 tcgtttgttcaaagcgcataactttcagtatgaaaatgagtaaagccacttgaac-acgaa--actaaaaagtcaaaaaatttaaatttttgacacataa 46265482  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtctt 227  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||   | |||||||||||||||| |||||||| |||    
T  46265481 atatattggaatttataccaatttttaatggactcgatgaggctattattacagttagtaattaacttaggtatgcaaccaccaaatccagttttgcctt 46265382  T
Q  228 cttgtgtc 235  Q
    ||||||||    
T  46265381 cttgtgtc 46265374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 25125383 - 25125179
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| ||||||||||||| || | |||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||| || |||||    
T  25125383 tcgtttgttcaaagcacataactttaggtacgaaaataagtaaagccacttgaaccacg--taactcaaaagtcaaagaatttaaattttttacccataa 25125286  T
Q  128 a-tatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtct 226  Q
    | ||||||| ||||||||| |||||||||||||||  | ||| |||||||||||| ||||||||||||  | ||||||||||||||||| | ||||| ||    
T  25125285 aatatattggaatttataccaatttttaatggactggacgagactattattacacatagtaattaacatcggtatgcaaccaccaaattgaattttgcct 25125186  T
Q  227 tcttgtg 233  Q
    |||||||    
T  25125185 tcttgtg 25125179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 15662460 - 15662620
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| | |||||||||||  |||||||  ||||||||||||||||||||| ||  |||||||||||||| |||||||||||||||||||||    
T  15662460 tcgtttgttcaaagcgcataactttaggcatggaaaggagtaaagccacttgaaccacgtat--ctcaaaagtcaaagaatttaaatttttgacacataa 15662557  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaatt 190  Q
    |||||||| ||||||||| |||||||||||||||| |||| | ||||||||||||||||||||    
T  15662558 atatattggaatttatactaatttttaatggactcgatgaagttattattacacttagtaatt 15662620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 95 - 235
Target Start/End: Complemental strand, 42916672 - 42916532
Alignment:
Q  95 aaaagtcaaaggatttaaatttttgacacataaatatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaaca 194  Q
    ||||||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||     
T  42916672 aaaagtcaaaaaatttaaatttttgacacataaatatattggaatttataccaatttttaatggactcgatgaggctattattacagttagtaattaact 42916573  T
Q  195 cggatatgcaaccaccaaattcagttttgtcttcttgtgtc 235  Q
      | |||||||||||||||| |||||||| |||||||||||    
T  42916572 taggtatgcaaccaccaaatccagttttgccttcttgtgtc 42916532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 28 - 172
Target Start/End: Original strand, 15014174 - 15014316
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| ||||||||||||| |||| |||  ||||||||||||||||||||  |||||||||||||||||| |||||||||||| ||  ||||    
T  15014174 tcgtttgttcaaagcacataactttaggtatgaaaacgagtaaagccacttgaaccac--ataactcaaaagtcaaagaatttaaattttttacctataa 15014271  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggcta 172  Q
    |||||||| ||||||||| |||||||||||||||  |||||||||    
T  15014272 atatattggaatttataccaatttttaatggactggatgaggcta 15014316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 90 - 235
Target Start/End: Original strand, 7595949 - 7596098
Alignment:
Q  90 aactcaaaagtcaaaggatttaaatttttgacacataaatata-----ttgaaatttatacaaatttttaatggactcaatgaggctattattacactta 184  Q
    |||||||||||||||  ||||||||||||||||||||||||||     ||| ||||||||  |||||||||||||||| |||||||||||||||||||||    
T  7595949 aactcaaaagtcaaaaaatttaaatttttgacacataaatataatatattggaatttatatcaatttttaatggactccatgaggctattattacactta 7596048  T
Q  185 gtaattaacacggatatgcaaccaccaaattcagttttgtcttcttgtgtc 235  Q
    |||||||||   | |||||||||||||||| ||| |||| |||||||||||    
T  7596049 gtaattaactttggtatgcaaccaccaaatccag-tttgccttcttgtgtc 7596098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 14579001 - 14578876
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| ||||||||||||| ||||||||| |||||| ||||||||||||||  ||||||||||||||||| |||||||||||| | ||||||    
T  14579001 tcgtttgttcaaagcacataactttaggtatggaaatgagtaaaaccacttgaaccacg--taactcaaaagtcaaagaatttaaattttttatacataa 14578904  T
Q  128 atatattgaaatttatacaaatttttaa 155  Q
    |||||||  ||||||||| |||||||||    
T  14578903 atatattagaatttataccaatttttaa 14578876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 14770800 - 14770704
Alignment:
Q  137 aatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtcttcttgtg 233  Q
    ||||||||| |||||||||||||||  ||||| |||||||||||| ||||||||||||  | ||||||||||||||||  | ||||| |||||||||    
T  14770800 aatttataccaatttttaatggactggatgagactattattacacatagtaattaacatcggtatgcaaccaccaaatcgaattttgccttcttgtg 14770704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 9e-54; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 33280610 - 33280407
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| |||||  |||||||||||| ||||||||| ||||||| |||||||||||||  |||||||| |||||||  ||||||||||||||| |||||    
T  33280610 tcgtttgttcaaaggacataactttaggtatggaaatgagtaaagtcacttgaaccacg--taactcaagagtcaaataatttaaatttttgacccataa 33280513  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtctt 227  Q
    || ||||||||||||||| ||||||||||||| |  |||||||||||||||||| ||||||||||||| | |||||||||| ||||| || ||||| |||    
T  33280512 atctattgaaatttataccaatttttaatggaatggatgaggctattattacacatagtaattaacaccggtatgcaaccatcaaatccaattttgcctt 33280413  T
Q  228 cttgtg 233  Q
    ||||||    
T  33280412 cttgtg 33280407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 31 - 240
Target Start/End: Complemental strand, 10750239 - 10750026
Alignment:
Q  31 tttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttg-----acacat 125  Q
    |||| ||||| ||||||||||||| ||||||||| |||||||||||||| ||||||  ||||||||||||||||  ||||||||||||      || |||    
T  10750239 tttgttcaaagcacataactttaggtatggaaataagtaaagccacttgtaccacg--taactcaaaagtcaaataatttaaattttttttgttacccat 10750142  T
Q  126 aaa-tatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgt 224  Q
    ||| ||||||| ||||||||| ||||||||||||| |  | ||| |||||||||| | ||||||||||||| | ||||||||||||||||| ||||||||    
T  10750141 aaaatatattggaatttataccaatttttaatggattggacgagactattattacgcatagtaattaacaccggtatgcaaccaccaaattaagttttgt 10750042  T
Q  225 cttcttgtgtcctatg 240  Q
    ||||||||||| ||||    
T  10750041 cttcttgtgtcatatg 10750026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 34515684 - 34515803
Alignment:
Q  113 atttttgacacataaatatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaa 212  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||   ||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  34515684 atttttgactcataaatatattgaaatttataccaatttttaatggactagctgaggctattattacacatagtaattaacactgatatgcaaccaccaa 34515783  T
Q  213 attcagttttgtcttcttgt 232  Q
    || |||||||| ||||||||    
T  34515784 atccagttttgccttcttgt 34515803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 27189506 - 27189399
Alignment:
Q  46 taactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacat--aaatatattgaaatttat 143  Q
    ||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||  |||||||||| |||||||    
T  27189506 taactttagatatggaaatgagtaaagccacttgaaccacg--taactcaaaagtcaaagaatttaaatttttgacacatcaaaatatattggaatttat 27189409  T
Q  144 acaaattttt 153  Q
    || |||||||    
T  27189408 accaattttt 27189399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 36 - 155
Target Start/End: Original strand, 23180927 - 23181045
Alignment:
Q  36 tcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaagga-tttaaatttttgacacataaatatatt 134  Q
    ||||||||||||||||||  |||| |||| |||||||||||||||||||  | ||||||||||||||||| | ||||||| ||| | ||| |||||||||    
T  23180927 tcaaaacacataactttaagtatgaaaatgagtaaagccacttgaacca--cctaactcaaaagtcaaagaattttaaatattttatacacaaatatatt 23181024  T
Q  135 gaaatttatacaaatttttaa 155  Q
    | ||||||||| |||||||||    
T  23181025 ggaatttataccaatttttaa 23181045  T

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Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 50 - 233
Target Start/End: Complemental strand, 32398327 - 32398146
Alignment:
Q  50 tttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataaatatattgaaatttatacaaat 149  Q
    ||||| |||| |||| |||||||||||||||||||||  ||||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||| |||    
T  32398327 tttaggtatgaaaatgagtaaagccacttgaaccacg--taactcaaaagtcaaagaatttaaatttttgacccataaatatattagaatttataccaat 32398230  T
Q  150 ttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtcttcttgtg 233  Q
    ||||||||||||  |||| ||||||||||||| ||||||||||||| | |||||||  || |||| |||||||| |||||||||    
T  32398229 ttttaatggactggatgaagctattattacacatagtaattaacactggtatgcaataactaaatccagttttgccttcttgtg 32398146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 36156880 - 36156680
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| ||||||||| ||| |||| |||| |||||| |||||||||| |||  ||||||||||||||||  ||||||||||||||| |||||    
T  36156880 tcgtttgttcaaagcacataactgtaggtatgaaaatgagtaaaaccacttgaacaacg--taactcaaaagtcaaataatttaaatttttgacccataa 36156783  T
Q  128 atatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtctt 227  Q
    |||||||||||||||||| |||||||||||||||  ||||||||   ||||||| ||||||||||||| | |||||||||||||||| ||||  || |||    
T  36156782 atatattgaaatttataccaatttttaatggactagatgaggct---attacacatagtaattaacactggtatgcaaccaccaaatccagtcctgcctt 36156686  T
Q  228 cttgtg 233  Q
    ||||||    
T  36156685 cttgtg 36156680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 161
Target Start/End: Original strand, 18990370 - 18990493
Alignment:
Q  36 tcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataaatatattg 135  Q
    ||||| ||| ||||||||| |||| |||| ||||||| |||||||||||||||  ||||||||||||| | |||||||||||||||||||||||||||||    
T  18990370 tcaaagcacgtaactttaggtatgaaaatgagtaaagtcacttgaaccacgca--actcaaaagtcaatgaatttaaatttttgacacataaatatattg 18990467  T
Q  136 aaatttatacaaatttttaatggact 161  Q
     ||||||||| |||||||||||||||    
T  18990468 gaatttataccaatttttaatggact 18990493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 28 - 155
Target Start/End: Complemental strand, 48340216 - 48340091
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| ||||||||||||| ||||||||| ||||||  |||||||||||||  || |||||||||||||| |||||||||||||| ||||||    
T  48340216 tcgtttgttcaaagcacataactttaggtatggaaatgagtaaaatcacttgaaccacg--tagctcaaaagtcaaagaatttaaatttttgatacataa 48340119  T
Q  128 atatattgaaatttatacaaatttttaa 155  Q
    |||||||||||||||||  |||||||||    
T  48340118 atatattgaaatttatatcaatttttaa 48340091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 155
Target Start/End: Complemental strand, 43812638 - 43812520
Alignment:
Q  36 tcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggattt-aaatttttgacacataaatatatt 134  Q
    ||||||||||||||||||  |||| |||| || ||| ||||||||||||||  ||||||||||||||||| |||| |||||||| | |||||||||||||    
T  43812638 tcaaaacacataactttaagtatgaaaatgagcaaaaccacttgaaccacg--taactcaaaagtcaaagaattttaaattttttatacataaatatatt 43812541  T
Q  135 gaaatttatacaaatttttaa 155  Q
    | ||||||||| |||||||||    
T  43812540 ggaatttataccaatttttaa 43812520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 128
Target Start/End: Complemental strand, 50147317 - 50147218
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtc-aaaggatttaaatttttgacacata 126  Q
    ||||||| ||||| ||||||||||||| ||||||||| |||| ||||||||||||||||  ||||| ||||||| |||| |||||||||||| || ||||    
T  50147317 tcgtttgttcaaagcacataactttaggtatggaaataagtatagccacttgaaccacg--taacttaaaagtcaaaagaatttaaattttttacccata 50147220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 6874898 - 6874797
Alignment:
Q  56 tatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacat-aaatatattgaaatttatacaaattttta 154  Q
    |||| |||| ||||||||||||||||||| |  ||||||||||||||||| |||||||| ||| |   || |||||||||| ||||||||| ||||||||    
T  6874898 tatgaaaataagtaaagccacttgaaccatg--taactcaaaagtcaaagaatttaaatgttttatctataaaatatattggaatttataccaattttta 6874801  T
Q  155 atgg 158  Q
    ||||    
T  6874800 atgg 6874797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 135
Target Start/End: Original strand, 54742294 - 54742359
Alignment:
Q  68 taaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataaatatattg 135  Q
    |||||||| ||||||||||  |||||||||||| |||  ||||||||||||||| |||||||||||||    
T  54742294 taaagccatttgaaccacg--taactcaaaagtaaaaaaatttaaatttttgacccataaatatattg 54742359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 95 - 235
Target Start/End: Complemental strand, 7866 - 7726
Alignment:
Q  95 aaaagtcaaaggatttaaatttttgacacataaatatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaaca 194  Q
    ||||||||||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||     
T  7866 aaaagtcaaaaaatttaaatttttgacacataaatatattggaatttataccaatttttaatggactcgatgaggctattattacagttagtaattaact 7767  T
Q  195 cggatatgcaaccaccaaattcagttttgtcttcttgtgtc 235  Q
      | |||||||||||||||| |||||||| |||||||||||    
T  7766 taggtatgcaaccaccaaatccagttttgccttcttgtgtc 7726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 8e-42; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 28 - 240
Target Start/End: Original strand, 2675470 - 2675681
Alignment:
Q  28 tcgtttgatcaaaacacataactttagatatggaaattagtaaagccacttgaaccacgcataactcaaaagtcaaaggatttaaatttttgacacataa 127  Q
    ||||||| ||||| |||||||||||||  ||| |||| |||||| | |||||||||||  |||||| ||||||||||| |||||||||||||||  ||||    
T  2675470 tcgtttgttcaaagcacataactttaggaatgaaaataagtaaatctacttgaaccac--ataacttaaaagtcaaagaatttaaatttttgacctataa 2675567  T
Q  128 a-tatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaattaacacggatatgcaaccaccaaattcagttttgtct 226  Q
    | ||||||| |||||  || || ||||||||||||  |||||||| ||||||||| ||||| |||||||   ||||||||||||||||||||||||||||    
T  2675568 aatatattggaattttaaccaaattttaatggactggatgaggctgttattacacatagtatttaacaccagtatgcaaccaccaaattcagttttgtct 2675667  T
Q  227 tcttgtgtcctatg 240  Q
    |||| |||| ||||    
T  2675668 tcttttgtcatatg 2675681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 235
Target Start/End: Complemental strand, 20191145 - 20191000
Alignment:
Q  90 aactcaaaagtcaaaggatttaaatttttgacacataaatatattgaaatttatacaaatttttaatggactcaatgaggctattattacacttagtaat 189  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||| |||||||||||||||||||||    
T  20191145 aactcaaaagtaaaaaaatttaaatttttgacacataaatatattggaatttatactaatttttaatggacccaatgaagctattattacacttagtaat 20191046  T
Q  190 taacacggatatgcaaccaccaaattcagttttgtcttcttgtgtc 235  Q
    ||||   | |||||||||| ||||| | ||| || ||| |||||||    
T  20191045 taactttggtatgcaaccatcaaatccggttgtgccttattgtgtc 20191000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 20188602 - 20188654
Alignment:
Q  170 ctattattacacttagtaattaacacggatatgcaaccaccaaattcagtttt 222  Q
    |||||||||||  | ||||||||||| | |||||||||||||||| |||||||    
T  20188602 ctattattacatatggtaattaacaccggtatgcaaccaccaaatccagtttt 20188654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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