View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17484_low_24 (Length: 227)

Name: NF17484_low_24
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17484_low_24
NF17484_low_24
[»] chr4 (8 HSPs)
chr4 (1-227)||(21201430-21201656)
chr4 (1-227)||(27258570-27258796)
chr4 (64-227)||(44344007-44344170)
chr4 (1-166)||(40088150-40088315)
chr4 (64-168)||(50979901-50980005)
chr4 (1-198)||(19940446-19940643)
chr4 (7-163)||(12109505-12109659)
chr4 (116-160)||(23154144-23154188)
[»] chr7 (6 HSPs)
chr7 (19-214)||(16804722-16804917)
chr7 (1-198)||(29541662-29541859)
chr7 (119-200)||(18152425-18152506)
chr7 (72-224)||(23104139-23104289)
chr7 (45-166)||(26572244-26572365)
chr7 (41-162)||(984704-984825)
[»] chr6 (4 HSPs)
chr6 (67-168)||(25437165-25437266)
chr6 (64-197)||(25462094-25462227)
chr6 (103-162)||(16107398-16107457)
chr6 (116-197)||(14275273-14275354)
[»] chr1 (6 HSPs)
chr1 (103-227)||(21502395-21502519)
chr1 (1-155)||(39440077-39440231)
chr1 (113-213)||(26661004-26661104)
chr1 (97-189)||(47899810-47899902)
chr1 (97-196)||(15244794-15244892)
chr1 (64-224)||(33079262-33079422)
[»] chr5 (3 HSPs)
chr5 (47-225)||(16511559-16511736)
chr5 (32-226)||(43582036-43582230)
chr5 (89-227)||(43587371-43587508)
[»] scaffold0316 (1 HSPs)
scaffold0316 (64-157)||(19708-19801)
[»] chr2 (2 HSPs)
chr2 (111-227)||(27466772-27466887)
chr2 (119-158)||(15828372-15828411)
[»] chr3 (1 HSPs)
chr3 (69-126)||(4287336-4287393)
[»] chr8 (1 HSPs)
chr8 (192-224)||(25234290-25234322)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 21201656 - 21201430
Alignment:
Q  1 gactaatttgcacgagtgcaaggtcttagaggagccttttaagcgctgagatctaattaaaattcttgtcataggccaaaggctcatcagaataagactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||    
T  21201656 gactaatttgcacgagtgcaaggtcttagaggagccttttaagcgctgagatctaattaagattcttgtcataggccaaaggctcggcagaataagactt 21201557  T
Q  101 tggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaacgtgaaggctaa 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21201556 cggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaacgtgaaggttaa 21201457  T
Q  201 gtgcacaacactcctagtgaccaccag 227  Q
    |||||||||||||||||||||||||||    
T  21201456 gtgcacaacactcctagtgaccaccag 21201430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 27258796 - 27258570
Alignment:
Q  1 gactaatttgcacgagtgcaaggtcttagaggagccttttaagcgctgagatctaattaaaattcttgtcataggccaaaggctcatcagaataagactt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  || ||||| ||||    
T  27258796 gactaatttgcacgagtgcaaggtcttagaggagccttttaagcgctgagatctaattaagattcttgtcataggccaaaggctcggcaaaataacactt 27258697  T
Q  101 tggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaacgtgaaggctaa 200  Q
     ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  27258696 cggtggtaaatgtttatgacctaacctagcaatgttgcatgttaggattatgtgattgtactccgaccatacattttcacgtgcttaacgtgacggctaa 27258597  T
Q  201 gtgcacaacactcctagtgaccaccag 227  Q
    |||||||||||||| ||||||||||||    
T  27258596 gtgcacaacactcccagtgaccaccag 27258570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 44344170 - 44344007
Alignment:
Q  64 tcttgtcataggccaaaggctcatcagaataagactttggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactc 163  Q
    |||||||| | |||||||||||| |||||||| |||| ||||| ||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  44344170 tcttgtcaaatgccaaaggctcaacagaataacacttcggtggaaaatgttgatgacctaacctaacaacgttgcatgttaagattatgtgattgtactc 44344071  T
Q  164 cgaccagaca-ttttcacgtgcttaacgtgaaggctaagtgcacaacactcctagtgaccaccag 227  Q
    ||| | || | | |||||||||||||| |||||||| |||| | ||||||| | ||| |||||||    
T  44344070 cga-ctgatagtcttcacgtgcttaacatgaaggctgagtgtaaaacactcatggtggccaccag 44344007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 40088315 - 40088150
Alignment:
Q  1 gactaatttgcacgagtgcaaggtcttagaggagccttttaagcgctgagatctaattaaaattcttgtcataggccaaaggctcatcagaataagactt 100  Q
    ||||| |||||| |||| | || |||| ||||||||||||||||| |||||||||| ||  | ||||||||||||||||||||||| |||||||| ||||    
T  40088315 gactactttgcatgagtactagatcttggaggagccttttaagcgttgagatctaactaggactcttgtcataggccaaaggctcaacagaataacactt 40088216  T
Q  101 tggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccga 166  Q
      |||| ||||||| |||||||||||||||| |||  |||||||  ||||||||| || |||||||    
T  40088215 cagtggaaaatgttgatgacctaacctaacagtgtaacatgttaaaattatgtgactgcactccga 40088150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 50979901 - 50980005
Alignment:
Q  64 tcttgtcataggccaaaggctcatcagaataagactttggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactc 163  Q
    ||||||||||||||||| ||||| || ||||| ||||  |||| ||||||| |||||||||||| ||||| | |||| ||| ||||| |||||||||| |    
T  50979901 tcttgtcataggccaaaagctcaacaaaataatacttcagtgggaaatgttgatgacctaaccttacaatatagcatattaagattacgtgattgtaccc 50980000  T
Q  164 cgacc 168  Q
    |||||    
T  50980001 cgacc 50980005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 19940643 - 19940446
Alignment:
Q  1 gactaatttgcacgagtgcaaggtcttagaggagccttttaagcgctgagatctaattaaaattcttgtcataggccaaaggctcatcagaataagactt 100  Q
    ||||||||||||||||| | || ||   | ||| |||||||| || |||||||||| ||  | ||||||| |||||  || ||| | || ||||||||||    
T  19940643 gactaatttgcacgagtaccagatcacggtggatccttttaatcgttgagatctaactaggactcttgtcttaggcggaaagctaaacataataagactt 19940544  T
Q  101 tggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaacgtgaaggct 198  Q
     ||||| ||||||| |||||||||| || |||  | |||||||| |||||||||| || |||||||   ||| | |||| ||||||||| ||||||||    
T  19940543 cggtgggaaatgttgatgacctaacttagcaacctagcatgttaagattatgtgactgcactccgattggacgtattcatgtgcttaacatgaaggct 19940446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 163
Target Start/End: Complemental strand, 12109659 - 12109505
Alignment:
Q  7 tttgcacgagtgcaaggtcttagaggagccttttaagcgctgagatctaattaaaattcttgtcataggccaaaggctcatcagaataagactttggtgg 106  Q
    ||||||||||| |  | ||||||| |||||| | ||||| |||||||||| ||  | ||||||||||||| ||||||||| ||   ||   ||| |||||    
T  12109659 tttgcacgagtacttgatcttagaagagcctat-aagcgttgagatctaactaggactcttgtcataggcaaaaggctcaacatg-tactgcttcggtgg 12109562  T
Q  107 taaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactc 163  Q
     ||||| | ||||||||||||| ||||||||| ||||| |||||||||| |||||||    
T  12109561 aaaatggtgatgacctaacctaccaatgttgcgtgttaagattatgtgagtgtactc 12109505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 23154144 - 23154188
Alignment:
Q  116 atgacctaacctaacaatgttgcatgttaggattatgtgattgta 160  Q
    |||| |||||||| ||||||||||||||| |||||||| ||||||    
T  23154144 atgatctaacctagcaatgttgcatgttaagattatgtaattgta 23154188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 16804722 - 16804917
Alignment:
Q  19 caaggtcttagaggagccttttaagcgctgagatctaattaaaattcttgtcataggccaaaggctcatcagaataagactttggtggtaaatgtttatg 118  Q
    |||| |||| || |||| |||||||||||||||||||| ||  | |||| |||||||||||||| ||| |||||||| ||||| |||| ||||||| |||    
T  16804722 caagatcttggaagagctttttaagcgctgagatctaactaggactcttatcataggccaaagggtcagcagaataacactttagtgggaaatgttgatg 16804821  T
Q  119 acctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaacgtgaaggctaagtgcacaacactcc 214  Q
    ||||||||||  || ||| ||||||| ||||||||||||||||||  | | |   |||||||||||||||| |||||| |  ||||||| ||||||    
T  16804822 acctaacctagtaacgttacatgttaagattatgtgattgtactctaaacggtagttttcacgtgcttaacatgaaggatgtgtgcacatcactcc 16804917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 29541859 - 29541662
Alignment:
Q  1 gactaatttgcacgagtgcaaggtcttagaggagccttttaagcgctgagatctaattaaaattcttgtcataggccaaaggctcatcagaataagactt 100  Q
    ||||||||||||||||| | || |||  ||| ||||| ||||||| |||  ||||| ||  | | |||||||||||||||||||||  | ||||| ||||    
T  29541859 gactaatttgcacgagtactagatctcggagaagcctcttaagcgatgatgtctaactaggactattgtcataggccaaaggctcaataaaataacactt 29541760  T
Q  101 tggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaacgtgaaggct 198  Q
    |   || || |||| ||||||||| ||| |||  | |||||||| ||||||||||||| ||||| |   ||||| |||||||||||||| ||||||||    
T  29541759 tatagggaactgttgatgacctaatctagcaacatagcatgttaagattatgtgattgcactcccattggacatcttcacgtgcttaacatgaaggct 29541662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 18152425 - 18152506
Alignment:
Q  119 acctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaacgtgaaggctaa 200  Q
    |||||||||| |  |||||||||||| ||||||||||||||| |||||   |||||||||||||| ||||| || |||||||    
T  18152425 acctaacctagccctgttgcatgttaagattatgtgattgtattccgataggacattttcacgtgtttaacatgtaggctaa 18152506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 72 - 224
Target Start/End: Original strand, 23104139 - 23104289
Alignment:
Q  72 taggccaaaggctcatcagaataagactttggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccaga 171  Q
    ||||||||||||||| || ||||| |||||| ||| ||||||| | || |||||||  ||| ||||||||  |  |||| ||||||||||||||||| |     
T  23104139 taggccaaaggctcagcacaataacactttgatggaaaatgttgacgatctaaccttgcaacgttgcatg--aatattacgtgattgtactccgaccggt 23104236  T
Q  172 cattttcacgtgcttaacgtgaaggctaagtgcacaacactcctagtgaccac 224  Q
      | || ||| ||||||| |||||| | ||||||||||||||| ||| |||||    
T  23104237 agtctttacgggcttaacttgaaggttgagtgcacaacactcccagttaccac 23104289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 26572365 - 26572244
Alignment:
Q  45 gctgagatctaattaaaattcttgtcataggccaaaggctcatcagaataagactttggtggtaaatgtttatgacctaacctaacaatgttgcatgtta 144  Q
    |||||||||||| ||  | |||||||| |||| ||||||||| || | ||  ||||||||   || |||| |||||||||||||  |||||||| |||||    
T  26572365 gctgagatctaactaggactcttgtcacaggcaaaaggctcagcatagtattactttggtttgaattgttgatgacctaacctagaaatgttgcgtgtta 26572266  T
Q  145 ggattatgtgattgtactccga 166  Q
     | |||||||| ||||||||||    
T  26572265 agtttatgtgagtgtactccga 26572244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 162
Target Start/End: Original strand, 984704 - 984825
Alignment:
Q  41 aagcgctgagatctaattaaaattcttgtcataggccaaaggctcatcagaataagactttggtggtaaatgtttatgacctaacctaacaatgttgcat 140  Q
    |||||||||||||||| |||   ||||| ||||||| |||| |||| || ||||  ||||| ||   || || | |||| ||||||   |||||||||||    
T  984704 aagcgctgagatctaactaaggctcttgccataggcgaaagactcaacataatattactttagtttgaattgctgatgatctaaccgtccaatgttgcat 984803  T
Q  141 gttaggattatgtgattgtact 162  Q
    |||| |||||||||||||||||    
T  984804 gttaagattatgtgattgtact 984825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 67 - 168
Target Start/End: Complemental strand, 25437266 - 25437165
Alignment:
Q  67 tgtcataggccaaaggctcatcagaataagactttggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccga 166  Q
    ||||||||||||||||||   |||||||| |||| ||||| ||||||| |||||||||||||||||| |||||||| | ||||||||||||||||| |||    
T  25437266 tgtcataggccaaaggcttcgcagaataacacttgggtggaaaatgttgatgacctaacctaacaatattgcatgtcaagattatgtgattgtacttcga 25437167  T
Q  167 cc 168  Q
    ||    
T  25437166 cc 25437165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 197
Target Start/End: Complemental strand, 25462227 - 25462094
Alignment:
Q  64 tcttgtcataggccaaaggctcatcagaataagactttggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactc 163  Q
    |||||| |||||||||||||| | |||||||| |||| ||||| |||| || |||| ||||| || ||||||||||||||| |||| |||| |||||||     
T  25462227 tcttgtaataggccaaaggcttagcagaataacacttgggtggaaaatattgatgatctaacttagcaatgttgcatgttaagattttgtgtttgtactt 25462128  T
Q  164 cgaccagacattttcacgtgcttaacgtgaaggc 197  Q
    | |||||   | |||||| ||||||| |||||||    
T  25462127 caaccagtagtcttcacgggcttaacatgaaggc 25462094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 16107398 - 16107457
Alignment:
Q  103 gtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtact 162  Q
    |||| ||||||| ||||||||||||| ||| | ||||||||| |||||||||||||||||    
T  16107398 gtggaaaatgttgatgacctaacctagcaacgatgcatgttaagattatgtgattgtact 16107457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 14275273 - 14275354
Alignment:
Q  116 atgacctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaacgtgaaggc 197  Q
    |||| |||||||| ||||||||| ||||| || ||||| ||||||||  |||  ||  |||||||||||||||| |||||||    
T  14275273 atgatctaacctagcaatgttgcgtgttaagactatgttattgtactttgacaggatgttttcacgtgcttaacatgaaggc 14275354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 21502395 - 21502519
Alignment:
Q  103 gtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaacgtgaaggctaagt 202  Q
    |||| ||||||| ||||||||| ||| ||| ||| ||||||| ||||||||||||||||||||||| |   | ||||| || |||||||||||||| |||    
T  21502395 gtgggaaatgttgatgacctaatctagcaacgttacatgttaagattatgtgattgtactccgaccggtagtcttcacatgtttaacgtgaaggctgagt 21502494  T
Q  203 gcacaacactcctagtgaccaccag 227  Q
    |||||||||||| || | |||||||    
T  21502495 gcacaacactcccagcggccaccag 21502519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 39440231 - 39440077
Alignment:
Q  1 gactaatttgcacgagtgcaaggtcttagaggagccttttaagcgctgagatctaattaaaattcttgtcataggccaaaggctcatcagaataagactt 100  Q
    |||| ||||||||| || |||  || ||||||||||| |||| ||||||||||||| ||  | |||||| |||||||||||||||  |||||||| | ||    
T  39440231 gactgatttgcacgggtacaaaatcgtagaggagcctcttaaacgctgagatctaactaggactcttgttataggccaaaggctcgacagaataaaaatt 39440132  T
Q  101 tggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtga 155  Q
     ||||| ||||||| |||| |||||||| ||| || ||||||||  |||||||||    
T  39440131 cggtggaaaatgttgatgatctaacctagcaacgtagcatgttaatattatgtga 39440077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 26661004 - 26661104
Alignment:
Q  113 tttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagaca-ttttcacgtgcttaacgtgaaggctaagtgcacaacac 211  Q
    |||||||||||||||| ||| ||||||||||| ||||||||||||||||||||| | || | | |||||||||||||| |||||| | |||||| |||||    
T  26661004 tttatgacctaacctagcaacgttgcatgttaagattatgtgattgtactccgatc-gatagtcttcacgtgcttaacatgaaggatgagtgcataacac 26661102  T
Q  212 tc 213  Q
    ||    
T  26661103 tc 26661104  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 189
Target Start/End: Complemental strand, 47899902 - 47899810
Alignment:
Q  97 actttggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaac 189  Q
    |||| ||||| ||||||| ||||||||||||| |||||||  |||||| ||||| ||||||||||||  |  |||| | ||||||||||||||    
T  47899902 acttcggtggaaaatgttgatgacctaacctagcaatgttatatgttaagattaggtgattgtactcaaataagacttcttcacgtgcttaac 47899810  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 15244794 - 15244892
Alignment:
Q  97 actttggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaacgtgaagg 196  Q
    |||| ||||| |||||||  |||||||||||| |||||| |  ||||| |||||||||||||||||| ||  |||||| |||| ||||||||| ||||||    
T  15244794 acttcggtggaaaatgttgctgacctaacctagcaatgt-gtgtgttaagattatgtgattgtactctgagaagacatcttcatgtgcttaacatgaagg 15244892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 33079262 - 33079422
Alignment:
Q  64 tcttgtcataggccaaaggctcatcagaataagactttggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactc 163  Q
    ||||||||||||||||||||||  || ||||| || |  |||  ||||||| |||| ||||||||  || ||||||| |||  |||| || ||| ||||     
T  33079262 tcttgtcataggccaaaggctcggcaaaataacacgtcagtgaaaaatgttgatgatctaacctagaaacgttgcattttaaaattacgtcattatactt 33079361  T
Q  164 cgaccagacattttcacgtgcttaacgtgaaggctaagtgcacaacactcctagtgaccac 224  Q
    |||||||   | |||||| | ||||| |||||| | |||||| ||||||||||||| ||||    
T  33079362 cgaccagtagtcttcacgggattaacatgaaggttgagtgcataacactcctagtggccac 33079422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 225
Target Start/End: Original strand, 16511559 - 16511736
Alignment:
Q  47 tgagatctaattaaaattcttgtcataggccaaaggctcatcagaataagactttggtggtaaatgtttatgacctaacctaacaatgttgcatgttagg 146  Q
    |||||||||||||  | ||||||||||||||||||||||| || | ||| |||| |||||  ||| |  ||||||||||||| ||||||||||||||| |    
T  16511559 tgagatctaattaggactcttgtcataggccaaaggctcaacatagtaacacttcggtgggtaatatcgatgacctaacctagcaatgttgcatgtta-g 16511657  T
Q  147 attatgtgattgtactccgaccagaca-ttttcacgtgcttaacgtgaaggctaagtgcacaacactcctagtgaccacc 225  Q
    ||||| ||||| |||||| ||| || | | |||| ||||||||| ||||||||  | |||||||||||| | ||||||||    
T  16511658 attatatgattttactccaacc-gatagtcttcaagtgcttaacatgaaggctgggagcacaacactcccactgaccacc 16511736  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 226
Target Start/End: Complemental strand, 43582230 - 43582036
Alignment:
Q  32 gagccttttaagcgctgagatctaattaaaattcttgtcataggccaaaggctcatc-agaataagactttggtggtaaatgtttatgacctaacctaac 130  Q
    |||||||| ||| | |||||||||| ||  | |||||||||| ||||||| |||| | ||||||| ||||| |||  ||||||| ||||| |||| || |    
T  43582230 gagcctttgaagtgttgagatctaactatgactcttgtcatacgccaaagtctcagctagaataacactttagtgagaaatgttgatgacataac-tagc 43582132  T
Q  131 aatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaacgtgaaggctaagtgcacaacactcctagtgaccacca 226  Q
    ||  || ||||||| |||||||| ||||||||| || |  || | |||||||| ||||| |||||| | ||||||||||||||| |||| ||||||    
T  43582131 aacattacatgttaagattatgtaattgtactctgatcgaacgtcttcacgtgtttaacatgaaggttgagtgcacaacactcccagtggccacca 43582036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 43587371 - 43587508
Alignment:
Q  89 agaataagactttggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaa 188  Q
    ||||||| |||||||||  ||||||| ||||| |||| || |||  || ||||||| |||||||| ||||||||  || | ||| | |||||||||||||    
T  43587371 agaataacactttggtgagaaatgttgatgacataac-tagcaacattacatgttaagattatgtaattgtactttgatcggacgtcttcacgtgcttaa 43587469  T
Q  189 cgtgaaggctaagtgcacaacactcctagtgaccaccag 227  Q
    | |||||| | ||||||||||||||| |||| |||||||    
T  43587470 cttgaaggttgagtgcacaacactcccagtggccaccag 43587508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 64 - 157
Target Start/End: Original strand, 19708 - 19801
Alignment:
Q  64 tcttgtcataggccaaaggctcatcagaataagactttggtggtaaatgtttatgacctaacctaacaatgttgcatgttaggattatgtgatt 157  Q
    |||||||||| ||||||||||||  ||||||| ||||| |||| ||||||| ||||||||||||| ||| | ||||||||| ||||||||||||    
T  19708 tcttgtcataagccaaaggctcagtagaataatactttagtggaaaatgttgatgacctaacctagcaacgatgcatgttaagattatgtgatt 19801  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 27466887 - 27466772
Alignment:
Q  111 tgtttatgacctaacctaacaatgttgcatgttaggattatgtgattgtactccgaccagacattttcacgtgcttaacgtgaaggctaagtgcacaaca 210  Q
    |||| |||| |||||||| ||||||||| ||||| |||||||||  ||||||||||   ||||| |||||||| ||||| |||||||| |||| |  ||     
T  27466887 tgttgatgatctaacctagcaatgttgcgtgttaagattatgtgtctgtactccgagaggacatcttcacgtgtttaacatgaaggctgagtgaaacac- 27466789  T
Q  211 ctcctagtgaccaccag 227  Q
    |||||||||||||||||    
T  27466788 ctcctagtgaccaccag 27466772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 158
Target Start/End: Complemental strand, 15828411 - 15828372
Alignment:
Q  119 acctaacctaacaatgttgcatgttaggattatgtgattg 158  Q
    |||||||||| ||||||||||||||| |||||||||||||    
T  15828411 acctaacctagcaatgttgcatgttaagattatgtgattg 15828372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 4287393 - 4287336
Alignment:
Q  69 tcataggccaaaggctcatcagaataagactttggtggtaaatgtttatgacctaacc 126  Q
    |||||||||||||||||| |||||||| |||||||| | ||||||| |||||||||||    
T  4287393 tcataggccaaaggctcaacagaataacactttggttgaaaatgttgatgacctaacc 4287336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 224
Target Start/End: Original strand, 25234290 - 25234322
Alignment:
Q  192 gaaggctaagtgcacaacactcctagtgaccac 224  Q
    ||||||| |||||||||||||||||||||||||    
T  25234290 gaaggctgagtgcacaacactcctagtgaccac 25234322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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