View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17484_low_28 (Length: 216)
Name: NF17484_low_28
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17484_low_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 38123535 - 38123352
Alignment:
| Q |
19 |
tcaacgtttctccaacctcttcttttcgcgtcttttgccatactcaatccaaggtaactttatagaagttgtggaagggaaaactattattaataagaca |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38123535 |
tcaacatttctccaacctcttcttttcgcgtcttttgccatactcaatccaaggtaactttatagaagttgtggaagggaaaactattattaataagacg |
38123436 |
T |
|
| Q |
119 |
caacgctaatgaccattttacaattgtcttgtataagattaaaaagttaaactcttaccac----taagctaacacctcgtaca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
38123435 |
caacgctaatgaccattttacaattgtcttgtataaaattaaaaagttaaactcttaccactaattaagctaacacctcgtaca |
38123352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University