View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17484_low_4 (Length: 553)
Name: NF17484_low_4
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17484_low_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 15 - 536
Target Start/End: Original strand, 42082876 - 42083375
Alignment:
| Q |
15 |
caaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgtttcgag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
42082876 |
caaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggtaagttcattctgaatgtttcgag |
42082975 |
T |
|
| Q |
115 |
ataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatgggtac |
214 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42082976 |
ataccgtatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacagaaacatctcagc--------- |
42083066 |
T |
|
| Q |
215 |
taatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacaacgataa |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42083067 |
-------------acctgttttcacaaccaccaaaaggaagaaaacaatattcagttctagatgatacaacaaacacaactgagacattgacatcgataa |
42083153 |
T |
|
| Q |
315 |
taatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgctacatagctttcaaata |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
42083154 |
taatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttctttaatatgaagcatcggtgctgcatagctttcaaata |
42083253 |
T |
|
| Q |
415 |
attaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacacttatgatttggcctct |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
42083254 |
attaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcaccaacacttatgatttggcctct |
42083353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 42086356 - 42086611
Alignment:
| Q |
10 |
agtagcaaagggaagataatcctcctgattaggacaccaaggaaatccattaagcagcaacttcttgtcaataatttgtggaaatttcattctgaatgtt |
109 |
Q |
| |
|
|||| |||| ||||||||| |||| || |||||||||||||||||| |||| |||| ||||||||| || | ||||||| || || ||||||||||| |
|
|
| T |
42086356 |
agtatcaaaaggaagataaccctcgtggttaggacaccaaggaaataaattatgcagaaacttcttg-cact--tttgtggcaagttgattctgaatgtg |
42086452 |
T |
|
| Q |
110 |
tcgagataccatatcaaacctgtcaaactgcattgagtaggatgcacggccctctgtcagcaccctaagtgtaccgacatacataaacatctcagcaatg |
209 |
Q |
| |
|
| ||| ||||| ||||||| || | || ||||| ||||| |||||||| |||| ||||| | | || ||||||| ||||||| |||||||||||||| |
|
|
| T |
42086453 |
ttgaggtaccacatcaaacatggctaattgcatagagtatgatgcacgaccctttgtcatccctcttagtgtactgacatactgaaacatctcagcaaga |
42086552 |
T |
|
| Q |
210 |
ggtactaatgactcaaccacctgttttcacaaccaccaaaaggaagaaaacaatattcagttcta |
274 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
42086553 |
ggtactaatgaatcaaccacctgtttt------caccaaaaggaagaaaacaatgttcagttcta |
42086611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 299 - 534
Target Start/End: Original strand, 42086665 - 42086890
Alignment:
| Q |
299 |
acattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggacaccagatacgtctttcttgaatatgaagcatcggtgct |
398 |
Q |
| |
|
||||||||| | |||| ||||| ||||||||| |||||||||||||||||||||| | |||||||||||||||| || ||||||||| || ||||| |
|
|
| T |
42086665 |
acattgacatcaataacaattttaaaaatggatgaaattgaatgtaactacaagtattggacaccagatacgtcatt----aatatgaagtgtc-gtgct |
42086759 |
T |
|
| Q |
399 |
acatagctttcaaataattaatatcttaaaatttaataaatgaacatggacgataaggttttgtgacttacgtagagtttatctggtttctcactaacac |
498 |
Q |
| |
|
|||||||||||||| | ||| ||| |||||||||| ||| ||||||| || | ||||||||||||||| | |||| | ||||||| |||| || || |
|
|
| T |
42086760 |
acatagctttcaaa----tcataccttcaaatttaatatatgcacatgga-gaaagggttttgtgacttaccttgagtccacctggtttgtcaccaaaac |
42086854 |
T |
|
| Q |
499 |
ttatgatttggcctcttcttctgctgagatcaccaa |
534 |
Q |
| |
|
| ||||||||||||||||| | |||||||||||| |
|
|
| T |
42086855 |
tattgatttggcctcttcttgagttgagatcaccaa |
42086890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 22284533 - 22284482
Alignment:
| Q |
310 |
gataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcggaca |
361 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||| || |||||||||| |
|
|
| T |
22284533 |
gataataatttgaaaaatggaaaaatttgaatgtaactgcatgtgtcggaca |
22284482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 37603915 - 37603961
Alignment:
| Q |
304 |
gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca |
350 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
37603915 |
gacaccgataacaatttgaaaaatggaagaaattgaatgtaaataca |
37603961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 3262022 - 3262086
Alignment:
| Q |
293 |
actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaactacaagtgtcg |
357 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
3262022 |
actgacacattgacatttataataattttcaaaatagaagaaattgaaagtaactacatgtgtcg |
3262086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 348
Target Start/End: Original strand, 6933139 - 6933194
Alignment:
| Q |
293 |
actgagacattgacaacgataataatttgaaaaatggaagaaattgaatgtaacta |
348 |
Q |
| |
|
||||| |||| |||| ||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
6933139 |
actgacacatcgacaccgatagtattttgaaaaatggaagaaattgaaagtaacta |
6933194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 18626931 - 18626976
Alignment:
| Q |
310 |
gataataatttgaaaaatggaagaaattgaatgtaactacaagtgt |
355 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||| |||||||| |||| |
|
|
| T |
18626931 |
gataataatttgaaaactggaagaaactgaatataactacatgtgt |
18626976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 30922528 - 30922574
Alignment:
| Q |
304 |
gacaacgataataatttgaaaaatggaagaaattgaatgtaactaca |
350 |
Q |
| |
|
||||| |||||||||| |||||||| || |||||||||||||||||| |
|
|
| T |
30922528 |
gacaatgataataattagaaaaatgcaataaattgaatgtaactaca |
30922574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 299 - 350
Target Start/End: Complemental strand, 8217086 - 8217034
Alignment:
| Q |
299 |
acattgacaacgataataatttga-aaaatggaagaaattgaatgtaactaca |
350 |
Q |
| |
|
|||| ||||||||||||||||| | ||||| |||| ||||||||||||||||| |
|
|
| T |
8217086 |
acatagacaacgataataattttagaaaatagaaggaattgaatgtaactaca |
8217034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 19629033 - 19629069
Alignment:
| Q |
310 |
gataataatttgaaaaatggaagaaattgaatgtaac |
346 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
19629033 |
gataatactttgaaaaatggaagtaattgaatgtaac |
19629069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University