View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17484_low_5 (Length: 514)

Name: NF17484_low_5
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17484_low_5
NF17484_low_5
[»] chr2 (3 HSPs)
chr2 (14-496)||(31131566-31132047)
chr2 (286-496)||(31153681-31153891)
chr2 (286-496)||(31135148-31135358)
[»] chr1 (6 HSPs)
chr1 (270-489)||(24466915-24467134)
chr1 (287-495)||(24484039-24484248)
chr1 (325-396)||(41143083-41143154)
chr1 (325-435)||(41108366-41108476)
chr1 (324-435)||(41118940-41119051)
chr1 (325-396)||(41129529-41129600)
[»] chr8 (2 HSPs)
chr8 (322-417)||(18094047-18094142)
chr8 (322-417)||(18104055-18104150)


Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 14 - 496
Target Start/End: Complemental strand, 31132047 - 31131566
Alignment:
Q  14 aatatcgaaacacaattatataaataaggaaaatgctaagaattgtcctctaaggcatcaaaaggtataggaaaatttcatgcatctcagattctaacaa 113  Q
    |||| ||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31132047 aataacgaaacacaattatataaataagaaaaatgataagaattgtcctc-aaggcatcaaaaggtataggaaaatttcatgcatctcagattctaacaa 31131949  T
Q  114 caacataacgattgtccatagattataataggtatatataaattgagtacaacttaaaataacttaagttctcaacatggcacactannnnnnnctcttg 213  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  31131948 caacataacgattgtccataaattataataggtatatataaattgagtacaacttaaaataacttaagttctcaacatggcacactatttttttctcttg 31131849  T
Q  214 tctcacaacaaatgtgccttatacaaagaaattatatatatactacaatatttgctccttgtttactttgactggaatagctcgcaaaggttgaccaata 313  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31131848 tctcacaacaaatgtgccttatacaaagaaattttatatatactacaatatttgctccttgtttactttgactggaatagctcgcaaaggttgaccaata 31131749  T
Q  314 tcactatctccattttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtggcattccaggacatattc 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31131748 tcactatctccattttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtggcatgccaggacatattc 31131649  T
Q  414 ttctcccactaccaaatggtgtcaattgaaaatcatggcccttgaaatttatttcagaccctaaaaacctctcaggtgaaaac 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||    
T  31131648 ttctcccactaccaaatggtgtcaattgaaaatcatggcccttgaaattaatttcagaccctaaaaatctctcaggtgaaaac 31131566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 286 - 496
Target Start/End: Complemental strand, 31153891 - 31153681
Alignment:
Q  286 tggaatagctcgcaaaggttgaccaatatcactatctccattttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattcta 385  Q
    |||||| |||||||| |||||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  31153891 tggaattgctcgcaagggttgatcaatatctctatctccattttccagtttccaatcaaaggaattaatcaatgatcctaacattgtatgcaacattcta 31153792  T
Q  386 atagcaagtggcattccaggacatattcttctcccactaccaaatggtgtcaattgaaaatcatggcccttgaaatttatttcagaccctaaaaacctct 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||  |||||||||||||| ||||| ||||| |||||||| |    
T  31153791 atagcaagtggcattccaggacatattcttctcccactaccaaatggtatgaattgataatgttggcccttgaaattaatttctgaccccaaaaaccttt 31153692  T
Q  486 caggtgaaaac 496  Q
    | |||||||||    
T  31153691 ctggtgaaaac 31153681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 286 - 496
Target Start/End: Original strand, 31135148 - 31135358
Alignment:
Q  286 tggaatagctcgcaaaggttgaccaatatcactatctccattttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattcta 385  Q
    |||||| ||| |||| |||||| ||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  31135148 tggaattgcttgcaagggttgatcaatatctctatctccattttccagtttccaatcaaaggaattaatcaatgatcctaacattgtatgcaacattcta 31135247  T
Q  386 atagcaagtggcattccaggacatattcttctcccactaccaaatggtgtcaattgaaaatcatggcccttgaaatttatttcagaccctaaaaacctct 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||  |||||||||||||| ||||| ||||| |||||||| |    
T  31135248 atagcaagtggcattccaggacatattcttctcccactaccaaatggtatgaattgataatgttggcccttgaaattaatttctgaccccaaaaaccttt 31135347  T
Q  486 caggtgaaaac 496  Q
    | |||||||||    
T  31135348 ctggtgaaaac 31135358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 4e-61; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 270 - 489
Target Start/End: Original strand, 24466915 - 24467134
Alignment:
Q  270 ccttgtttactttgactggaatagctcgcaaaggttgaccaatatcactatctccattttctagtttccaatcaaagaaattaatcaatgatcctaacat 369  Q
    |||| |||||| | ||||||||||||||||| ||||||  ||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24466915 ccttatttactctaactggaatagctcgcaagggttgattaatgtctctatctccattttccagtttccaatcaaagaaattaatcaatgatcctaacat 24467014  T
Q  370 agtatgcaacattctaatagcaagtggcattccaggacatattcttctcccactaccaaatggtgtcaattgaaaatcatggcccttgaaatttatttca 469  Q
      |||| | |||| || ||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||  || || |||||||| |||||     
T  24467015 catatgtatcattttagtagcaagtggcatgccagggcatattcttctcccaccaccaaatggtgtcaattgaaaattttgaccattgaaattaatttct 24467114  T
Q  470 gaccctaaaaacctctcagg 489  Q
    ||||| ||||||||||||||    
T  24467115 gaccccaaaaacctctcagg 24467134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 287 - 495
Target Start/End: Original strand, 24484039 - 24484248
Alignment:
Q  287 ggaatagctcgcaaaggttgaccaatatcactatctccattttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattctaa 386  Q
    |||||||||||||| |||||| ||||||| ||||| ||||||| ||| |||||| ||||  |||||||||||||||||||||| ||||| |||||||| |    
T  24484039 ggaatagctcgcaagggttgatcaatatctctatcaccattttgtagcttccaagcaaaacaattaatcaatgatcctaacattgtatgtaacattctta 24484138  T
Q  387 tagcaagtggcattccaggacatattcttc-tcccactaccaaatggtgtcaattgaaaatcatggcccttgaaatttatttcagaccctaaaaacctct 485  Q
    |||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||  || ||||||||||| ||||| || || ||||||||||    
T  24484139 tagcaagtggcattccaggacacattcttctttccactaccaaatggtgtcaattgaaaattttgtcccttgaaattaatttctgaacccaaaaacctct 24484238  T
Q  486 caggtgaaaa 495  Q
     |||||||||    
T  24484239 gaggtgaaaa 24484248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 325 - 396
Target Start/End: Original strand, 41143083 - 41143154
Alignment:
Q  325 attttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtgg 396  Q
    |||||| ||||||||||||||| | |||||||||||||| |||||   ||||||||| |||| |||||||||    
T  41143083 attttcaagtttccaatcaaaggagttaatcaatgatcccaacatcaaatgcaacatcctaacagcaagtgg 41143154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 435
Target Start/End: Complemental strand, 41108476 - 41108366
Alignment:
Q  325 attttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtggcattccaggacatattcttctcccacta 424  Q
    |||||| ||||||||||||||| | || ||||||||||| |||||   ||||||||| |||| |||||||||    ||||||||||| | ||| ||||||    
T  41108476 attttcaagtttccaatcaaaggagttgatcaatgatcccaacatcaaatgcaacatcctaacagcaagtggtgagccaggacatatacgtcttccacta 41108377  T
Q  425 ccaaatggtgt 435  Q
    || || |||||    
T  41108376 ccgaacggtgt 41108366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 435
Target Start/End: Original strand, 41118940 - 41119051
Alignment:
Q  324 cattttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtggcattccaggacatattcttctcccact 423  Q
    ||||||| ||||||||||||||| | || ||||||||||| |||||   ||| ||||| |||| |||||||||    ||||||||||| | ||| |||||    
T  41118940 cattttcaagtttccaatcaaaggagttgatcaatgatcccaacatcaaatgtaacatcctaacagcaagtggtgagccaggacatatacgtcttccact 41119039  T
Q  424 accaaatggtgt 435  Q
    ||| || |||||    
T  41119040 accgaacggtgt 41119051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 325 - 396
Target Start/End: Complemental strand, 41129600 - 41129529
Alignment:
Q  325 attttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtgg 396  Q
    |||||| ||||||||||||||| | |||||||||||||| |||||   ||| ||||| |||| |||||||||    
T  41129600 attttcaagtttccaatcaaaggagttaatcaatgatcccaacatcaaatgaaacatcctaacagcaagtgg 41129529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 417
Target Start/End: Complemental strand, 18094142 - 18094047
Alignment:
Q  322 tccattttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtggcattccaggacatattcttct 417  Q
    ||||| ||| ||||||||||||||| |||||||||| ||||| |||||  || |||||||||||||||| |  ||||  |||||||| ||||||||    
T  18094142 tccatcttcaagtttccaatcaaagcaattaatcaaagatcccaacatcataggcaacattctaatagccaaaggcaagccaggacaaattcttct 18094047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 417
Target Start/End: Complemental strand, 18104150 - 18104055
Alignment:
Q  322 tccattttctagtttccaatcaaagaaattaatcaatgatcctaacatagtatgcaacattctaatagcaagtggcattccaggacatattcttct 417  Q
    ||||| ||| ||||||||||||||| |||||| ||| ||||| |||||  || |||| ||||||||||| |  ||||  |||||||| ||||||||    
T  18104150 tccatcttcaagtttccaatcaaagcaattaaccaaagatcccaacatcataggcaatattctaatagccaaaggcaaaccaggacaaattcttct 18104055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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