View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17484_low_8 (Length: 426)
Name: NF17484_low_8
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17484_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 11460742 - 11460542
Alignment:
| Q |
18 |
catgcagagtaaatgacaagaaaaaataacgtgaacttagctcaacgccgtgccatgcgcagaatacttgccattttccttgactttcagagcactgcgt |
117 |
Q |
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| T |
11460742 |
catgcacagtaaatgacaagaaaaaataacgtgaacttagctcaacgccgtgccatgcgcagaatacttgccattttccttgactttaagagcactgcgt |
11460643 |
T |
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| Q |
118 |
gcttaatgaataaaaaatctatgatatgtcgacattgtgccctaggcagaacaagagcatcacctttttaaacactcattgccctaacacattaccacca |
217 |
Q |
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| T |
11460642 |
gcttaatgaataaaaaatctatgatatgtcgacattgtgccctaggcagaacaagagcatcacctttttaaacactcattgccacaacacattaccacca |
11460543 |
T |
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| Q |
218 |
a |
218 |
Q |
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| T |
11460542 |
a |
11460542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 250 - 417
Target Start/End: Complemental strand, 11460536 - 11460369
Alignment:
| Q |
250 |
ttaactacaatggtttcaccaataggaaccatagttttcagcaccattggaagagcccaatatggttttgatgttttctacacgaacctcaagaaccata |
349 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
11460536 |
ttaactacaatgtcttcaccaataggaaccatcgttttcagcaccattggaagagcccaatatggttttgatgttttctacacaaacctcaagaaccact |
11460437 |
T |
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| Q |
350 |
ccaatcatgatcactgcctcactgatggtatatcaataaacttcaatgcccaattcactaatgatgat |
417 |
Q |
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| T |
11460436 |
ccaaccatgatcactgcctcaccgatggtatatcaataaacttcaacgcccaattcactgatgatgat |
11460369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 11321904 - 11321836
Alignment:
| Q |
273 |
aggaaccatagttttcagcaccattggaagagcccaatatggttttgatgttttctacacgaacctcaa |
341 |
Q |
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| T |
11321904 |
aggaaccatcgttttcaacaccgtaggaagaacccaatacggtttcgatgttttctacacacacctcaa |
11321836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 341
Target Start/End: Complemental strand, 11479925 - 11479857
Alignment:
| Q |
273 |
aggaaccatagttttcagcaccattggaagagcccaatatggttttgatgttttctacacgaacctcaa |
341 |
Q |
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| T |
11479925 |
aggaaccatcgttttcaacaccgtaggaagaacccaatacggtttcgatgttttctacacacacctcaa |
11479857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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