View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17484_low_9 (Length: 423)

Name: NF17484_low_9
Description: NF17484
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17484_low_9
NF17484_low_9
[»] chr8 (5 HSPs)
chr8 (18-331)||(2786477-2786790)
chr8 (353-423)||(2786367-2786434)
chr8 (214-273)||(2823447-2823506)
chr8 (274-313)||(34549469-34549508)
chr8 (61-99)||(2804296-2804334)
[»] chr3 (1 HSPs)
chr3 (353-423)||(37811012-37811083)
[»] chr6 (2 HSPs)
chr6 (274-312)||(16120106-16120144)
chr6 (353-421)||(16119600-16119669)
[»] chr7 (2 HSPs)
chr7 (353-421)||(39413477-39413546)
chr7 (353-404)||(43310985-43311037)
[»] chr2 (1 HSPs)
chr2 (353-400)||(29139518-29139564)


Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 2786790 - 2786477
Alignment:
Q  18 aacatgttcccaatgatattattgtacgacaacgatcatttgaattctctttctacaatgaatggatcatatcactaaccaatgatgatataataatgca 117  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2786790 aacatgttcacaatgatattattgtacgacaacgatcatttgaattctctttctacaatgaatggatcatatcactaaccaatgatgatataataatgca 2786691  T
Q  118 atgaatacatatacagttcaattttttcaatactcaattctttgatgctaagttatacttttatgaattatgacatccgaacatgcaagtaacgatatgc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  2786690 atgaatacatatacagttcaattttttcaatactcaattctttgatgctaagttatacttttatgaattatgacatccaaacatgcaagtaacaatatgc 2786591  T
Q  218 aaacgaatcatgctctcgtagataccaaacgtgaaagtttccatcatttcgttatggagcaattcttctgtggtcacaaccacaaatattattggtacaa 317  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2786590 aaacgaatcatgctcccgtagataccaaacgtgaaagtttccatcatttcgttatggagcaattcttgtgtggtcacaaccacaaatattattggtacaa 2786491  T
Q  318 acagaaatatgtat 331  Q
    ||||||||||||||    
T  2786490 acagaaatatgtat 2786477  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 353 - 423
Target Start/End: Complemental strand, 2786434 - 2786367
Alignment:
Q  353 gttaatatgtattgttgtgtgtgcgcttaatgatttggatttgtgtttttgtctatcttaaaatttctctt 423  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||| ||||||||||    
T  2786434 gttaatatgtattgttgtgtgt---cttaatgatttggatttgtgtttttgtctatcttagaatttctctt 2786367  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 2823447 - 2823506
Alignment:
Q  214 atgcaaacgaatcatgctctcgtagataccaaacgtgaaagtttccatcatttcgttatg 273  Q
    ||||||||||||||||||| |||| |||||||| |||||||||||||||||||| |||||    
T  2823447 atgcaaacgaatcatgctcccgtatataccaaaagtgaaagtttccatcatttcattatg 2823506  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 313
Target Start/End: Original strand, 34549469 - 34549508
Alignment:
Q  274 gagcaattcttctgtggtcacaaccacaaatattattggt 313  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  34549469 gagcaattcttgtgtggtcacaaccataaatattattggt 34549508  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 2804334 - 2804296
Alignment:
Q  61 attctctttctacaatgaatggatcatatcactaaccaa 99  Q
    ||||| |||||||||| ||||||||||||||||||||||    
T  2804334 attctatttctacaattaatggatcatatcactaaccaa 2804296  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 423
Target Start/End: Complemental strand, 37811083 - 37811012
Alignment:
Q  353 gttaatatgtattgttgtgtgtgcgcttaa-tgatttggatttgtgtttttgtctatcttaaaatttctctt 423  Q
    |||||| |||||||||||||||| || ||| |||||| ||||||||||| ||||||||||| ||||||||||    
T  37811083 gttaatgtgtattgttgtgtgtgtgcctaaatgatttagatttgtgtttgtgtctatcttagaatttctctt 37811012  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 312
Target Start/End: Complemental strand, 16120144 - 16120106
Alignment:
Q  274 gagcaattcttctgtggtcacaaccacaaatattattgg 312  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  16120144 gagcaattcttgtgtggtcacaaccacaaatattattgg 16120106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 421
Target Start/End: Complemental strand, 16119669 - 16119600
Alignment:
Q  353 gttaatatgtattgttgtgtgtg-cgcttaatgatttggatttgtgtttttgtctatcttaaaatttctc 421  Q
    ||||||||||||| |||||| ||  ||| ||||||||| |||||||||| ||| ||||||| ||||||||    
T  16119669 gttaatatgtattattgtgtatgtggctaaatgatttgaatttgtgtttgtgtatatcttagaatttctc 16119600  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 353 - 421
Target Start/End: Original strand, 39413477 - 39413546
Alignment:
Q  353 gttaatatgtattgttgtgtgtgcgcttaa-tgatttggatttgtgtttttgtctatcttaaaatttctc 421  Q
    |||||| |||||||||||||||| || ||| |||||||||||||||||| ||||||| | | ||||||||    
T  39413477 gttaatgtgtattgttgtgtgtgtgcctaaatgatttggatttgtgtttgtgtctatttaagaatttctc 39413546  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 404
Target Start/End: Original strand, 43310985 - 43311037
Alignment:
Q  353 gttaatatgtattgttgtgtgtgcgct-taatgatttggatttgtgtttttgt 404  Q
    |||||| |||||||||||||||| ||  |||||||||||||||| ||||||||    
T  43310985 gttaatgtgtattgttgtgtgtgtgccataatgatttggatttgggtttttgt 43311037  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 353 - 400
Target Start/End: Original strand, 29139518 - 29139564
Alignment:
Q  353 gttaatatgtattgttgtgtgtgcgcttaatgatttggatttgtgttt 400  Q
    |||||| ||||||||||||||||| || ||||||||||||||||||||    
T  29139518 gttaatgtgtattgttgtgtgtgc-ctaaatgatttggatttgtgttt 29139564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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