View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17485_high_2 (Length: 486)
Name: NF17485_high_2
Description: NF17485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17485_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 11 - 470
Target Start/End: Complemental strand, 10571376 - 10570916
Alignment:
| Q |
11 |
cataggctaataggttattaatttaactataggtctattttcaattcaattcttatactagtatatatgttagttgagtatcacttaattatggcctagg |
110 |
Q |
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| T |
10571376 |
cataggctaataggttattaatttaactataggtctattttcaattcaattcttatactagtatatatgttggttgagcatcacttaattatggcctagg |
10571277 |
T |
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| Q |
111 |
tggtgctgtcttttgagaaccagtgtactaattttccttttcaagattctgaaaagttaaaggttactttcatttt-ctgtttcacgattctatttagta |
209 |
Q |
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| T |
10571276 |
tggtgctgtcttttgagaaccagtgtactaattttccttttcaagattctgaaaagttaaaggttactttcatttttctgtttcacgattatatttagta |
10571177 |
T |
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| Q |
210 |
gtatttactattctgtcttgtgttttcttggtttgtacagtttttccatacactgcacatgttacttgtagctaggccaaaaatctaatgttggttgtga |
309 |
Q |
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| T |
10571176 |
gtatttactattctgtcttgtgttttcttggtttgtactgtttttccatacaatgcacatgttacttgtagctaggccaaaaatctaatgttgtttgtga |
10571077 |
T |
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| Q |
310 |
caaaaagaaggagcttttgttgagtaattttggtgtccttgtcggggatcatgacattaaatatgttgtccatgtttgctgtgatttgaacattatattc |
409 |
Q |
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| T |
10571076 |
caaaaagaaggagcttttgttgagtaattttggtgtccttgtcggggatcatgacattaaatatgttgtccatgtttgctgtgatttgaacattatattc |
10570977 |
T |
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| Q |
410 |
ccttttgaaaatttgttttatatgaattgatgtttggattgtgaaaattgaatggtaaatg |
470 |
Q |
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| T |
10570976 |
ccttttgaaaatttgttttatatgaattgatgtttggattgtgaaaattgaacggtaaatg |
10570916 |
T |
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