View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17485_high_3 (Length: 435)
Name: NF17485_high_3
Description: NF17485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17485_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 11809681 - 11809254
Alignment:
| Q |
1 |
agaacaaaatctagggtccaacttcatatgcttaaactatcatctatttcacaatcagtatacgaacaaatcaagaatttgccacatttatattattcta |
100 |
Q |
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| T |
11809681 |
agaacaaaatctagggtccaacttcatatgcttaaactatcatctatttcacaatcagtatacaaacaaatcaagaatttgccacatttatattattcta |
11809582 |
T |
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| Q |
101 |
ttcaacttcatagcataatatttcttaacctccatactcgaatacaattcttagaaaccatgaaaatggaaacatgcgtgcttcttaaatctta------ |
194 |
Q |
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| T |
11809581 |
ttcaacttcatagcataatatttcttaacttccatactcgaatacaattcttagaaaccatgaaaatggaaacatgcgtgcttcttaaatcttaaggaat |
11809482 |
T |
|
| Q |
195 |
--tttgcttgcaccttaaacaacaagtcaacagctaaagaaatgtgcattttcatataatccgaacggtgttcagaacacaatagaaaaatttgttatta |
292 |
Q |
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| T |
11809481 |
tatttgcttgcaccttaaacaacaagtcaacagctaaagaaatgtgcattttcatataatccgaacggtgttcagaacacaatagaaaaatttgttatta |
11809382 |
T |
|
| Q |
293 |
aatcaaattctgcagcaacaaaaacataaactaaacaacacaatttcaaca--agacttccgtgtcaaacaaggttgtctcatatgaacttgtattttag |
390 |
Q |
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| T |
11809381 |
aatcaaattctgcagcaacaaaaacataaactaaacaacacaatttcaacaagagacttccgtgtcaaacagggttgtctcatatgaacttg-attttag |
11809283 |
T |
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| Q |
391 |
atcggtttcgatctggatttggaatttta |
419 |
Q |
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| T |
11809282 |
atcggtttcgatctgcatttggaatttta |
11809254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 57
Target Start/End: Complemental strand, 11802348 - 11802313
Alignment:
| Q |
22 |
cttcatatgcttaaactatcatctatttcacaatca |
57 |
Q |
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| T |
11802348 |
cttcatatgcttaaactatcatatatttcacaatca |
11802313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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