View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17485_high_5 (Length: 298)
Name: NF17485_high_5
Description: NF17485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17485_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 29114901 - 29115175
Alignment:
| Q |
13 |
caaaggaaatagcttaaaagtgtagttgtattctaaaatacaaccatttattttcatatctcaattttctcactcacattatcccttttccttctcaccc |
112 |
Q |
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| T |
29114901 |
caaaggaaatagcttaaaagtgtagttgtattctaaaatacaaccatttattttcatatctcaattttctcactcacattatcccttttccttctcaccc |
29115000 |
T |
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| Q |
113 |
acattatcccttttatttctcattacattgcaatttgcatcatttctcttatatttctactttgaaattcaccttcgatctatgttccttgtagagtgta |
212 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29115001 |
acattatcccttttctttctcattacattgcaatttgcatcatttctcttatatttctactttgaaattcaccttcgatctatgttccttgtagagtgta |
29115100 |
T |
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| Q |
213 |
tacacatgagtgtgaaaa-taacc-ttttttgtttaag-ataacagcag--caaaaaagtgattaaagctaatta |
282 |
Q |
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|||||||||||||||||| ||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
29115101 |
tacacatgagtgtgaaaattaacctttttttgtttaagaataacagcagacgaaaaaagtgattaaagctaatta |
29115175 |
T |
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