View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17485_low_1 (Length: 525)
Name: NF17485_low_1
Description: NF17485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17485_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 25 - 514
Target Start/End: Original strand, 25717748 - 25718240
Alignment:
| Q |
25 |
tatcaatgtccttaaattgcaatcttaatgtttgtgtatctttggaattacttattctgtatgtaaaatatcaagaaagttgatgttaactaagtt-aat |
123 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| || |||||||||| ||| |
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| T |
25717748 |
tatcaatgtccttaaaatgcaatgttaatgtttgtgtatctttggaattacttattctgcatgtacaatatcaagaaagttagtggtaactaagtttaat |
25717847 |
T |
|
| Q |
124 |
caa-tatc-ttcaagtatttctactgattaaattaacctccaaatttggaatgagaatccaagacaaagtgtcagtggaattgttaggtgtgattaacaa |
221 |
Q |
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||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25717848 |
caaatatccttcaagtttttctactgattaaattaacctccaaatttggaatgagaatccaagataaagtgtcagtggaattgttaggtgtgattaacaa |
25717947 |
T |
|
| Q |
222 |
aagtctaatttccttctgttttgactttttggactacttggttattgattaagcacaacaattacaatttggcttatgatttaatagtttattataataa |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25717948 |
aagtctaatttccttctgttttgactttttggactacttggttattgattaagcacaacaattacaatttggcttatgatttaatactttattataataa |
25718047 |
T |
|
| Q |
322 |
tgataacagtaataatgattatttcctttgctcattctcacactatatatatcctctcagtcctaaccattcttcatatcaagtaaatagttggattgct |
421 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25718048 |
tgataacagtaataatgactatttcctttgctcattctcacactatatatatcctctcagtcctaaccattcttcatatcaagtaaatagttggattgct |
25718147 |
T |
|
| Q |
422 |
acaagagaaccttaatttgtgagtcttcataagttgttagttatagttaaatattgacctgctattacttgtttaaaatttctaactattcat |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25718148 |
acaagagaaccttaatttgtgagtcttcataagttgttagttatagttaaatattgacctgctattacttgtttaaaatttctaactattcat |
25718240 |
T |
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