View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17485_low_4 (Length: 378)
Name: NF17485_low_4
Description: NF17485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17485_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 9373257 - 9372898
Alignment:
| Q |
13 |
aaaatagagggcagttgttaatgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9373257 |
aaaatagagggcagttgttaatgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgt |
9373158 |
T |
|
| Q |
113 |
gaatttattaatgagactgcatgtgttattctgcaagatgctatgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtcttctttgt |
212 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9373157 |
gaatttattaatgatactgcatgtgttattctgcaagatgccatgaatattaaaatgagtttgagatgcatgatgaatatagctggcatgtcttctttgt |
9373058 |
T |
|
| Q |
213 |
gttggcaatcagaaaacatcattagtcatcaataagtttgtgcatactctgctgccacattaccctcatcatttcaattattattattggtgctgcatat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9373057 |
gttggcaatcagaaaacatcattagtcatcaataagtttgtgcatactctgctgccacattaccctcatcatttcaattattattattggtgctgcatat |
9372958 |
T |
|
| Q |
313 |
tactcagagatgtgttgtatatgaaggagctgcatgctacatgatttcaattgtaataat |
372 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9372957 |
tactcagagatgtgttctatatgaaggagctgcatgctacatgatttcaattgtaataat |
9372898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 9293292 - 9293530
Alignment:
| Q |
13 |
aaaatagagggcagttgttaatgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgt |
112 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9293292 |
aaaatagacagcagttgttaatgatggtgtagagcatgtggtgcctacatgaattgccatttgaatatggtaagcttgttacatgttagtccaacattgt |
9293391 |
T |
|
| Q |
113 |
gaatttattaatgagactgcatgtgttattctgcaagatgctatgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtcttctttgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
9293392 |
gaatttattaatgagactgcatgtgttattctgctagatgctatgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtcttcatagt |
9293491 |
T |
|
| Q |
213 |
gttggcaatcagaaaacatcattagtcatcaataagttt |
251 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
9293492 |
gttggcaatcataaaacctcattagtcatcagtaagttt |
9293530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 13 - 308
Target Start/End: Original strand, 9288771 - 9289063
Alignment:
| Q |
13 |
aaaatagagggcagttgttaatgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgt |
112 |
Q |
| |
|
|||||||| ||||||||||| ||||| |||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9288771 |
aaaatagacagcagttgttaaggatggtgtagagcatgtggtgcctacataaattgccatttgaatatggtaagcttgttacatgttagtccaacattga |
9288870 |
T |
|
| Q |
113 |
gaatttattaatgagactgcatgtgttattctgcaagatgctatgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtcttctttgt |
212 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9288871 |
gaatttattaatgatactgcatgtgttattctgcaagatgctatgaatattgaaatgagtttgagatgcatgatgaatatagctggcatgtcttctttgt |
9288970 |
T |
|
| Q |
213 |
gttggcaatcagaaaacatcattagtcatcaataagtttgtgcatactctgctgccacattaccctcatcatttcaattattattattggtgctgc |
308 |
Q |
| |
|
|||||||||| |||||| ||| ||||||| | ||||||| | | ||||||||||||||||| ||||||| || |||||||| |||||| |||| |
|
|
| T |
9288971 |
gttggcaatcggaaaacctcagtagtcattagtaagttt---cctcctctgctgccacattacactcatcaattaaattattaaaattggttctgc |
9289063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 23 - 308
Target Start/End: Original strand, 9297909 - 9298191
Alignment:
| Q |
23 |
gcagttgttaatgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttatta |
122 |
Q |
| |
|
||||||||||| ||||| || |||||||||||| | | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9297909 |
gcagttgttaaggatggtgttgagcatgtggtgtcaatatggatttccctttgaatatggtaagcttgttacatgttagtccaacattgtgaatatatta |
9298008 |
T |
|
| Q |
123 |
atgagactgcatgtgttattctgcaagatgc-tatgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtcttctttgtgttggcaat |
221 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
9298009 |
atgatactgcatgtgttattctgcaagatgcttatg-atattaaaatgagtttgagatgcatgatgaatatagctgccatgtctttatagtgttggcaat |
9298107 |
T |
|
| Q |
222 |
cagaaaacatcattagtcatcaataagtttgtgcatactctgctgccacattaccctcatcatttcaattattattattggtgctgc |
308 |
Q |
| |
|
|||||||||||||||||||| | ||||||| | | ||||||||||||||||| |||||| || |||||| | ||||||||||| |
|
|
| T |
9298108 |
cagaaaacatcattagtcattagtaagttt---cctcctctgctgccacattacattcatcaattaaattatgaaaattggtgctgc |
9298191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 9305774 - 9305950
Alignment:
| Q |
27 |
ttgttaatgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatga |
126 |
Q |
| |
|
|||||| |||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9305774 |
ttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatga |
9305873 |
T |
|
| Q |
127 |
gactgcatgtgttattctgcaagatgc-tatgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgt |
203 |
Q |
| |
|
|||||||||| |||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9305874 |
tactgcatgtgatattttgcaagatgcttatg-atattgaaatgagtttgaggttcatgatgaatatagctggcatgt |
9305950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 27 - 309
Target Start/End: Original strand, 9302156 - 9302430
Alignment:
| Q |
27 |
ttgttaatgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatga |
126 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| || || ||| ||||| ||||||||||||||||| |||| ||||||||||||| | | ||||| |
|
|
| T |
9302156 |
ttgttagtgatggtgtagagcatgtggtgcctgcagga-tttccctttaaatatggtaagcttgtttgatgt-----caacattgtgaatatgtgaatga |
9302249 |
T |
|
| Q |
127 |
gactgcatgtgttattctgcaagatgct-atgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtcttctttgtgttggcaatcaga |
225 |
Q |
| |
|
| |||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
9302250 |
tattgcatgtgatattctgcaagatgcttatga-tattgaaatgagtttgaggtgcatgatgaatatagctggcatgtctttgtagtgttggcaatcaga |
9302348 |
T |
|
| Q |
226 |
aaacatcattagtcatcaataagtttgtgcatactctgctgccacattaccctcatcatttcaattattattattggtgctgca |
309 |
Q |
| |
|
|||| |||||||||||||| |||| ||| | || ||||||||||||||||||||| |||||||||| | |||||||||||| |
|
|
| T |
9302349 |
aaacctcattagtcatcaactagtt--tgcctcctttgctgccacattaccctcatcgtttcaattataaaaattggtgctgca |
9302430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 27 - 323
Target Start/End: Original strand, 9332577 - 9332869
Alignment:
| Q |
27 |
ttgttaatgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatga |
126 |
Q |
| |
|
||||| ||||||| ||||||||||||||||| |||| ||| | ||||||||| |||| ||||||| ||||| ||| |||||||||| | | |||| |
|
|
| T |
9332577 |
ttgttgatgatggtttagagcatgtggtgcctgtatga-tttccttttgaatatagtaaccttgttagatgttttcccagcattgtgaatatgtgaatgg |
9332675 |
T |
|
| Q |
127 |
gactgcatgtgttattctgcaagatgctatgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtcttctttgtgttggcaatcagaa |
226 |
Q |
| |
|
| ||||||| |||| ||||||||||||||| |||| |||||| |||||| ||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
9332676 |
tatcgcatgtggtattatgcaagatgctatga-tattaaaatgaatttgagatgcatgatgaatatagctggcatgtcttcctagtgttggcaatcagaa |
9332774 |
T |
|
| Q |
227 |
aacatcattagtcatcaataagtttgtgcatactctgctgccacattaccctcatcatttcaattattattattggtgctgcatattactcagagat |
323 |
Q |
| |
|
||| ||||||||||||||| || | ||| | || |||||||||||||||||||||||||||||||| | ||| ||| |||||||| ||| ||||| |
|
|
| T |
9332775 |
aacctcattagtcatcaattagct--tgcctcctttgctgccacattaccctcatcatttcaattataaaaattagtggtgcatatttctctgagat |
9332869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 9352301 - 9352475
Alignment:
| Q |
27 |
ttgttaatgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatga |
126 |
Q |
| |
|
|||||| |||||| |||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||| |||||||||||||| | | ||||| |
|
|
| T |
9352301 |
ttgttagtgatggtgtagagcatgtggtgcctgcatga--tttcctttaaatatggtaagcttgttacatgttttcccaacattgtgaatatgtgaatga |
9352398 |
T |
|
| Q |
127 |
gactgcatgtgttattctgcaagatgc-tatgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgt |
203 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9352399 |
tactgcatgtgatattctgcaagatgcttatg-atattgaaatgagtttgaggttcatgatgaatatagctggcatgt |
9352475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 34 - 372
Target Start/End: Complemental strand, 9367309 - 9366984
Alignment:
| Q |
34 |
tgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatgagactgca |
133 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| || |||||||||||||||||||||||| ||||| |||||||||||||| | | ||||| | ||| |
|
|
| T |
9367309 |
tgatggtgtagagcatgtggtgcctgcatga-ttcccctttgaatatggtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagca |
9367211 |
T |
|
| Q |
134 |
tgtgttattctgcaagatgctatgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtcttctttgtgttggcaatcagaaaacatca |
233 |
Q |
| |
|
||||||| ||||||| ||| |||| |||||||||||||||||| ||||||||||||||||||||| || ||||||||||| ||||||| ||| |
|
|
| T |
9367210 |
tgtgttaatctgcaa-------tga-tattaaaatgagtttgaggtgcacgatgaatatagctggcatgtcctccgagtgttggcaattagaaaacctca |
9367119 |
T |
|
| Q |
234 |
ttagtcatcaataagtttgtgcatactctgctgccacattaccctcatcatttcaattattattattggtgctgcatattactcagagatgtgttgtata |
333 |
Q |
| |
|
||||||| |||| || | ||| | || |||||||||| ||| ||||||||||||||| || |||||||| ||| | |||||||||||| || |
|
|
| T |
9367118 |
ttagtcaccaattagct--tgcctcctttgctgccaca-tacattcatcatttcaatta-taaaattggtgccacatttggttcagagatgtgtgcagta |
9367023 |
T |
|
| Q |
334 |
tgaaggagctgcatgctacatgatttcaattgtaataat |
372 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
9367022 |
tgaaggagctgcatgctacaagctttcagttgtaataat |
9366984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 27 - 293
Target Start/End: Complemental strand, 9309692 - 9309413
Alignment:
| Q |
27 |
ttgttaatgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatga |
126 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| |||| |||| |||||||||||||||||||||| | | | |||||||||||||| | ||||||| |
|
|
| T |
9309692 |
ttgttaatcatggtttagagcatgtggtgcctgcatggatttccctttgaatatggtaagcttgtcatacctctacccaacattgtgaatatgttaatga |
9309593 |
T |
|
| Q |
127 |
gactgcatgtgttattctgcaagatgctatgaatattgaaatgagtttgaggtgcatgatga------------atatagctggcatgtcttctttgtgt |
214 |
Q |
| |
|
| |||||||| || ||||||||||||| || |||||||||| ||| || |||||||||| ||||| ||||||||||||| | ||| |
|
|
| T |
9309592 |
tattgcatgtgatactctgcaagatgctctg-atattgaaattggttcaagatgcatgatgaatattattcactatataactggcatgtcttcctaatgt |
9309494 |
T |
|
| Q |
215 |
tggcaatcagaaaacatcattagtcatcaataagtt--tgtgcatactctgctgccacattaccctcatcatttcaattat |
293 |
Q |
| |
|
||||||||||||||| ||||||||||||||| || | | ||| | ||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
9309493 |
tggcaatcagaaaacctcattagtcatcaattagctagtttgcctcctctgctgctacattagactcataatttcaattat |
9309413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 293
Target Start/End: Complemental strand, 9348728 - 9348453
Alignment:
| Q |
27 |
ttgttaatgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatga |
126 |
Q |
| |
|
|||||||| |||| ||||||||||| || || ||||||||| | ||||||||||||||| |||| | || | |||||||||||||| | ||||||| |
|
|
| T |
9348728 |
ttgttaatcatggtttagagcatgtgctggctgcatgaatttccatttgaatatggtaaggttgtcatatctctacccaacattgtgaatatgttaatga |
9348629 |
T |
|
| Q |
127 |
gactgcatgtgttattctgcaagatgctatgaatattgaaatgagtttgaggtgcatgatgaatat------------agctggcatgtcttctttgtgt |
214 |
Q |
| |
|
| |||||||| || |||||||||||||||| |||||||||| ||| || |||||||||||||| | ||||||||||||| | ||| |
|
|
| T |
9348628 |
tattgcatgtgatactctgcaagatgctatg-atattgaaattggttcaagatgcatgatgaatattattcactataaaactggcatgtcttcctaatgt |
9348530 |
T |
|
| Q |
215 |
tggcaatcagaaaacatcattagtcatcaataagtttgtgcatactctgctgccacattaccctcatcatttcaattat |
293 |
Q |
| |
|
|||||| |||||||| | ||||||||||||| |||| ||| | ||||||||| |||||| ||||| ||||||||||| |
|
|
| T |
9348529 |
tggcaaacagaaaacctgattagtcatcaattagtt--tgcctcctctgctgctacattagactcataatttcaattat |
9348453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 192
Target Start/End: Complemental strand, 9356098 - 9355934
Alignment:
| Q |
27 |
ttgttaatgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatga |
126 |
Q |
| |
|
|||||||| |||| ||||||||||| || || ||||||||| | ||||||||||||||| |||| | || | |||||||||||||| | ||||||| |
|
|
| T |
9356098 |
ttgttaatcatggtttagagcatgtgctggctgcatgaatttccatttgaatatggtaaggttgtcatatctctacccaacattgtgaatatgttaatga |
9355999 |
T |
|
| Q |
127 |
gactgcatgtgttattctgcaagatgctatgaatattgaaatgagtttgaggtgcatgatgaatat |
192 |
Q |
| |
|
| |||||||| || ||||||||||||| || |||||||||| ||| || |||||||||||||| |
|
|
| T |
9355998 |
tattgcatgtgatactctgcaagatgctctg-atattgaaattggttcaagatgcatgatgaatat |
9355934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 9355919 - 9355873
Alignment:
| Q |
195 |
ctggcatgtcttctttgtgttggcaatcagaaaacatcattagtcat |
241 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
9355919 |
ctggcatgtcttcctaatgttggcaatcagaaaacctcattagtcat |
9355873 |
T |
|
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