View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17485_low_6 (Length: 249)

Name: NF17485_low_6
Description: NF17485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17485_low_6
NF17485_low_6
[»] chr4 (7 HSPs)
chr4 (1-239)||(29114573-29114810)
chr4 (49-114)||(49138933-49138998)
chr4 (47-112)||(41058850-41058915)
chr4 (6-56)||(39386675-39386725)
chr4 (71-113)||(55085122-55085164)
chr4 (74-114)||(2635085-2635125)
chr4 (8-56)||(26911802-26911850)
[»] scaffold0168 (1 HSPs)
scaffold0168 (49-114)||(31748-31813)
[»] chr5 (7 HSPs)
chr5 (47-114)||(29922816-29922883)
chr5 (68-112)||(16293999-16294043)
chr5 (47-111)||(22226332-22226396)
chr5 (9-56)||(27374290-27374337)
chr5 (47-104)||(14299262-14299319)
chr5 (74-114)||(3043127-3043167)
chr5 (8-56)||(42858150-42858198)
[»] chr6 (9 HSPs)
chr6 (46-114)||(7262993-7263061)
chr6 (74-114)||(5724753-5724793)
chr6 (8-56)||(17225894-17225942)
chr6 (47-114)||(2234437-2234504)
chr6 (12-59)||(26280644-26280691)
chr6 (47-114)||(29240548-29240615)
chr6 (8-58)||(882726-882776)
chr6 (49-114)||(25195462-25195527)
chr6 (8-56)||(852574-852622)
[»] chr3 (4 HSPs)
chr3 (1-58)||(32523328-32523385)
chr3 (63-114)||(12674935-12674986)
chr3 (74-114)||(3845235-3845275)
chr3 (47-111)||(48410908-48410972)
[»] chr7 (4 HSPs)
chr7 (8-56)||(40491620-40491668)
chr7 (49-114)||(17111797-17111862)
chr7 (69-114)||(38123766-38123811)
chr7 (69-114)||(45004907-45004952)
[»] chr1 (4 HSPs)
chr1 (47-114)||(28083984-28084051)
chr1 (8-56)||(30850394-30850442)
chr1 (12-56)||(7524155-7524199)
chr1 (46-114)||(47892483-47892551)
[»] chr2 (6 HSPs)
chr2 (69-114)||(40582671-40582716)
chr2 (74-114)||(30503131-30503171)
chr2 (74-114)||(4778475-4778515)
chr2 (74-114)||(11759943-11759983)
chr2 (74-114)||(16013834-16013874)
chr2 (6-58)||(32596031-32596083)
[»] chr8 (3 HSPs)
chr8 (47-99)||(7602202-7602254)
chr8 (8-56)||(32927934-32927982)
chr8 (74-114)||(35495182-35495222)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 29114810 - 29114573
Alignment:
Q  1 cattcatattcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29114810 cattcatattcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttc 29114711  T
Q  101 tagaatcaattttgtcacccatagattatttgatttctttccacttgactacaatagcttagatagcggtgggaattttggggtattcctcgtatactta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  29114710 tagaatcaattttgtcacccatagattatttgatttctttccacttgactacaatagcttagatagcggtgggaattttggggtattcctcgtatac-ta 29114612  T
Q  201 cattagatttacaacagcatttacatttctatacctttg 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29114611 cattagatttacaacagcatttacatttctatacctttg 29114573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 49138933 - 49138998
Alignment:
Q  49 aatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    |||||||||| || |||||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  49138933 aatcaattttacttgaaaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttg 49138998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 41058915 - 41058850
Alignment:
Q  47 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattt 112  Q
    |||||||||||| |||||||||| || ||||||| | |||||||||||| | | ||||||||||||    
T  41058915 aaaatcaattttactcgaaaacatccaaacatgtcacaatcaattctactcctttagaatcaattt 41058850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 39386725 - 39386675
Alignment:
Q  6 atattcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 56  Q
    ||||||||||||||||||||| ||||||| || ||| ||| ||||||||||    
T  39386725 atattcatgtaaaagtgagttgaactttaaatatgtgtgtgaaaatcaatt 39386675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 55085122 - 55085164
Alignment:
Q  71 cctaacatgttagaatcaattctacacttctagaatcaatttt 113  Q
    |||||||||||| ||||||||||| || |||||||||||||||    
T  55085122 cctaacatgttaaaatcaattctatacctctagaatcaatttt 55085164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 2635125 - 2635085
Alignment:
Q  74 aacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    ||||||| | |||||||| ||||||||||||||||||||||    
T  2635125 aacatgtcaaaatcaattttacacttctagaatcaattttg 2635085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 26911802 - 26911850
Alignment:
Q  8 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 56  Q
    |||||||||||||||| ||||||| || ||||||||||  |||||||||    
T  26911802 attcatgtaaaagtgaattaaactataaatttgtatgtggaaatcaatt 26911850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 31813 - 31748
Alignment:
Q  49 aatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    |||||||||| ||||| ||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  31813 aatcaattttactcgacaacaaccaaacatgtcagaatcaattctacacctctagaatcaattttg 31748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 29922883 - 29922816
Alignment:
Q  47 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    |||||||||| ||||||| ||||||| ||||||| | ||||||||||||||| |||||||||||||||    
T  29922883 aaaatcaattctgctcgagaacaaccaaacatgtcaaaatcaattctacactactagaatcaattttg 29922816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 16293999 - 16294043
Alignment:
Q  68 caacctaacatgttagaatcaattctacacttctagaatcaattt 112  Q
    ||||| ||||||||| ||||||||||||||||||| |||||||||    
T  16293999 caaccaaacatgttaaaatcaattctacacttctataatcaattt 16294043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 22226332 - 22226396
Alignment:
Q  47 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaatt 111  Q
    ||||||||||||  |||| ||||||| ||||||| |||||||||||||||| || | ||||||||    
T  22226332 aaaatcaattttagtcgacaacaaccaaacatgtcagaatcaattctacacgtccaaaatcaatt 22226396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 56
Target Start/End: Original strand, 27374290 - 27374337
Alignment:
Q  9 ttcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 56  Q
    |||||||||| |||||||||||  || |||||||||||||||||||||    
T  27374290 ttcatgtaaatgtgagttaaaccgtaaatttgtatgtaaaaatcaatt 27374337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 104
Target Start/End: Complemental strand, 14299319 - 14299262
Alignment:
Q  47 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctaga 104  Q
    ||||||||||||  |||||||||||| || |||  |||||||||||||||| ||||||    
T  14299319 aaaatcaattttattcgaaaacaaccaaatatgccagaatcaattctacacctctaga 14299262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 3043127 - 3043167
Alignment:
Q  74 aacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    ||||||| | |||||||||||||| ||||||||||||||||    
T  3043127 aacatgtcaaaatcaattctacacctctagaatcaattttg 3043167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 42858198 - 42858150
Alignment:
Q  8 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 56  Q
    ||||||||||||||||||| |||| || |||||| ||| ||||||||||    
T  42858198 attcatgtaaaagtgagttgaactataaatttgtgtgtgaaaatcaatt 42858150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 7263061 - 7262993
Alignment:
Q  46 aaaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    ||||||||||| | ||||| |||| ||||| |||| | |||||||||||||||||||||||||||||||    
T  7263061 aaaaatcaattatactcgagaacatcctaaaatgtcaaaatcaattctacacttctagaatcaattttg 7262993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 5724753 - 5724793
Alignment:
Q  74 aacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  5724753 aacatgtcagaatcaattctacacttctagaattaattttg 5724793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 17225942 - 17225894
Alignment:
Q  8 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 56  Q
    |||||||||||| |||||| |||| || |||||||||||||||||||||    
T  17225942 attcatgtaaaactgagttgaactataaatttgtatgtaaaaatcaatt 17225894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 2234504 - 2234437
Alignment:
Q  47 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    |||||||||| | |||||||  || | |||||||| |||||| |||||||||| ||||||||||||||    
T  2234504 aaaatcaattctactcgaaagtaatcgaacatgtttgaatcagttctacacttatagaatcaattttg 2234437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 59
Target Start/End: Complemental strand, 26280691 - 26280644
Alignment:
Q  12 atgtaaaagtgagttaaactttatatttgtatgtaaaaatcaattttg 59  Q
    ||||||||||||||| |||| || ||||||| ||||||||||||||||    
T  26280691 atgtaaaagtgagtttaactataaatttgtacgtaaaaatcaattttg 26280644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 29240548 - 29240615
Alignment:
Q  47 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    |||||||||| | || ||||| | |||||||||| | |||||||| ||||| ||||||||||||||||    
T  29240548 aaaatcaattctacttgaaaatatcctaacatgtcaaaatcaattttacacctctagaatcaattttg 29240615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 882776 - 882726
Alignment:
Q  8 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatttt 58  Q
    ||||||| |||||||||||||||  || ||||| |||||||||||||||||    
T  882776 attcatgcaaaagtgagttaaacaataaatttgaatgtaaaaatcaatttt 882726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 114
Target Start/End: Original strand, 25195462 - 25195527
Alignment:
Q  49 aatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    |||||||| | ||||| | ||||| ||||||| |||||||||| ||||| || |||||||||||||    
T  25195462 aatcaattatactcgatagcaaccaaacatgtcagaatcaattatacacatccagaatcaattttg 25195527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 852622 - 852574
Alignment:
Q  8 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 56  Q
    |||||||||||||||||||||||  || |||||  ||||||||||||||    
T  852622 attcatgtaaaagtgagttaaacaatacatttgggtgtaaaaatcaatt 852574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 32523328 - 32523385
Alignment:
Q  1 cattcatattcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatttt 58  Q
    ||||||| |||||||| |||||||||||||| || |||||| ||||||||||||||||    
T  32523328 cattcatgttcatgtataagtgagttaaactctaaatttgtgtgtaaaaatcaatttt 32523385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 12674986 - 12674935
Alignment:
Q  63 gaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    |||||||||| |||||||||| ||||||||||||| || |||||||||||||    
T  12674986 gaaaacaaccaaacatgttaggatcaattctacacctccagaatcaattttg 12674935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 3845235 - 3845275
Alignment:
Q  74 aacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    ||||||| | |||||||||||||| ||||||||||||||||    
T  3845235 aacatgtcaaaatcaattctacacctctagaatcaattttg 3845275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 48410908 - 48410972
Alignment:
Q  47 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaatt 111  Q
    |||||||||| | ||||||| ||| | ||||| | ||||||||||| |||||| |||||||||||    
T  48410908 aaaatcaattctactcgaaagcaatcaaacatctcagaatcaattccacacttatagaatcaatt 48410972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 40491668 - 40491620
Alignment:
Q  8 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 56  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||||    
T  40491668 attcatgtaaaagtgagttaaactttaaatttgtgtgtaaaagtcaatt 40491620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 114
Target Start/End: Complemental strand, 17111862 - 17111797
Alignment:
Q  49 aatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    |||||||| | ||||||| ||||| ||||||| ||||||||||| |||  |||||||| |||||||    
T  17111862 aatcaattctactcgaaagcaaccaaacatgtcagaatcaattcgacatctctagaattaattttg 17111797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 38123766 - 38123811
Alignment:
Q  69 aacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    |||| ||||||||| |||||||||||||  ||||||||||||||||    
T  38123766 aaccaaacatgttaaaatcaattctacatctctagaatcaattttg 38123811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 45004952 - 45004907
Alignment:
Q  69 aacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    |||| ||||||| | |||||||||||||| ||||||||||||||||    
T  45004952 aaccaaacatgtcaaaatcaattctacacctctagaatcaattttg 45004907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 28083984 - 28084051
Alignment:
Q  47 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    |||||||||| | ||||||||||||| || |||| ||||||||||||||||| | ||| |||||||||    
T  28083984 aaaatcaattctactcgaaaacaaccaaatatgtcagaatcaattctacactaccagagtcaattttg 28084051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 30850394 - 30850442
Alignment:
Q  8 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 56  Q
    ||||||||||||||||||| |||| || |||||||||| ||||||||||    
T  30850394 attcatgtaaaagtgagttgaactataaatttgtatgttaaaatcaatt 30850442  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 7524199 - 7524155
Alignment:
Q  12 atgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 56  Q
    ||||||||||||||| |||| || |||||| ||||||||||||||    
T  7524199 atgtaaaagtgagttgaactataaatttgtgtgtaaaaatcaatt 7524155  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 47892483 - 47892551
Alignment:
Q  46 aaaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    ||||||||||| | ||| ||| ||||| ||||||   |||||||||||||||||| | |||||||||||    
T  47892483 aaaaatcaattctactcaaaagcaaccaaacatgacggaatcaattctacacttccataatcaattttg 47892551  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 114
Target Start/End: Complemental strand, 40582716 - 40582671
Alignment:
Q  69 aacctaacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    |||| ||||||||| |||||||||||||| ||||||||||||||||    
T  40582716 aaccaaacatgttaaaatcaattctacacctctagaatcaattttg 40582671  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 30503171 - 30503131
Alignment:
Q  74 aacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  30503171 aacatgttagaatcaattctacacttccaaaatcaattttg 30503131  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 4778515 - 4778475
Alignment:
Q  74 aacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    |||||||||  |||||||||||||||||||||| |||||||    
T  4778515 aacatgttaacatcaattctacacttctagaattaattttg 4778475  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 11759943 - 11759983
Alignment:
Q  74 aacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    ||||||| |||||||||||||||||||  ||||||||||||    
T  11759943 aacatgtcagaatcaattctacacttccggaatcaattttg 11759983  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 16013834 - 16013874
Alignment:
Q  74 aacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    ||||||||| |||||||||||||| |||||||| |||||||    
T  16013834 aacatgttaaaatcaattctacacctctagaataaattttg 16013874  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 58
Target Start/End: Complemental strand, 32596083 - 32596031
Alignment:
Q  6 atattcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatttt 58  Q
    ||||| ||||||||||||||| || | |  |||||||||||||||||||||||    
T  32596083 atatttatgtaaaagtgagttgaattatgaatttgtatgtaaaaatcaatttt 32596031  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 99
Target Start/End: Original strand, 7602202 - 7602254
Alignment:
Q  47 aaaatcaattttgctcgaaaacaacctaacatgttagaatcaattctacactt 99  Q
    |||||||||||| ||||||||||||| || || ||||| ||||||||||||||    
T  7602202 aaaatcaattttactcgaaaacaaccaaaaatattagattcaattctacactt 7602254  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 32927982 - 32927934
Alignment:
Q  8 attcatgtaaaagtgagttaaactttatatttgtatgtaaaaatcaatt 56  Q
    ||||||||||||||||||| |||| || |||||| ||||||||| ||||    
T  32927982 attcatgtaaaagtgagttgaactataaatttgtgtgtaaaaatgaatt 32927934  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 35495222 - 35495182
Alignment:
Q  74 aacatgttagaatcaattctacacttctagaatcaattttg 114  Q
    ||||||| | |||||||||||||||| ||||||||||||||    
T  35495222 aacatgtcaaaatcaattctacacttgtagaatcaattttg 35495182  T

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