View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17485_low_7 (Length: 208)

Name: NF17485_low_7
Description: NF17485
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17485_low_7
NF17485_low_7
[»] chr6 (8 HSPs)
chr6 (50-116)||(19305851-19305917)
chr6 (93-159)||(19305851-19305917)
chr6 (50-116)||(10122332-10122398)
chr6 (93-159)||(10122332-10122398)
chr6 (93-159)||(10126554-10126620)
chr6 (50-116)||(10126554-10126620)
chr6 (95-144)||(19310342-19310391)
chr6 (65-114)||(19310342-19310391)
[»] chr2 (8 HSPs)
chr2 (93-159)||(43159352-43159418)
chr2 (50-116)||(43159352-43159418)
chr2 (50-116)||(38250105-38250171)
chr2 (93-159)||(38250105-38250171)
chr2 (93-159)||(38255472-38255538)
chr2 (50-116)||(38255472-38255538)
chr2 (50-116)||(43154102-43154168)
chr2 (93-159)||(43154102-43154168)
[»] chr7 (6 HSPs)
chr7 (93-155)||(22492411-22492473)
chr7 (54-116)||(22492411-22492473)
chr7 (50-116)||(22489252-22489318)
chr7 (93-159)||(22489252-22489318)
chr7 (50-114)||(48944292-48944356)
chr7 (95-159)||(48944292-48944356)
[»] chr5 (12 HSPs)
chr5 (93-159)||(25384068-25384134)
chr5 (50-116)||(25384068-25384134)
chr5 (58-116)||(25482726-25482784)
chr5 (93-151)||(25482726-25482784)
chr5 (50-116)||(25379448-25379514)
chr5 (93-159)||(25379448-25379514)
chr5 (93-137)||(10292978-10293022)
chr5 (72-116)||(10292978-10293022)
chr5 (97-137)||(25484273-25484313)
chr5 (72-112)||(25484273-25484313)
chr5 (96-159)||(23231600-23231664)
chr5 (50-113)||(23231600-23231664)
[»] chr1 (16 HSPs)
chr1 (93-159)||(11318766-11318832)
chr1 (50-116)||(11318766-11318832)
chr1 (93-159)||(11476787-11476853)
chr1 (50-116)||(11476787-11476853)
chr1 (50-116)||(28244199-28244267)
chr1 (93-159)||(28244199-28244267)
chr1 (50-116)||(11471322-11471388)
chr1 (93-159)||(11471322-11471388)
chr1 (50-114)||(17430769-17430834)
chr1 (95-159)||(17430769-17430834)
chr1 (95-144)||(17431708-17431757)
chr1 (65-114)||(17431708-17431757)
chr1 (50-116)||(50017608-50017674)
chr1 (93-159)||(50017608-50017674)
chr1 (97-144)||(50027519-50027566)
chr1 (65-112)||(50027519-50027566)
[»] chr4 (10 HSPs)
chr4 (50-111)||(48792819-48792880)
chr4 (98-159)||(48792819-48792880)
chr4 (95-135)||(48796046-48796086)
chr4 (74-114)||(48796046-48796086)
chr4 (52-114)||(28166913-28166976)
chr4 (95-157)||(28166913-28166976)
chr4 (93-159)||(28167595-28167662)
chr4 (50-116)||(28167595-28167662)
chr4 (54-116)||(54362234-54362297)
chr4 (93-155)||(54362234-54362297)
[»] chr3 (2 HSPs)
chr3 (66-116)||(33862375-33862425)
chr3 (93-143)||(33862375-33862425)


Alignment Details
Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 19305851 - 19305917
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19305851 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccct 19305917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 19305917 - 19305851
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  19305917 agggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 19305851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 10122332 - 10122398
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  10122332 tgtgtaacattgggtattttatgttatataacattgtccaatcagggtgtgccacgtggcacaccct 10122398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 10122398 - 10122332
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  10122398 agggtgtgccacgtggcacaccctgattggacaatgttatataacataaaatacccaatgttacaca 10122332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 10126554 - 10126620
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||||||||||||||||||| ||||| |||||||||||||| |||||| | | ||||||||||    
T  10126554 agggtgtgccacgtggcacacccttattggacaatgttatataacataaaatccactatgttacaca 10126620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 10126620 - 10126554
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||| | | |||||| |||||||||||||| ||||| ||||||||||||||||||||||||    
T  10126620 tgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacgtggcacaccct 10126554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 19310342 - 19310391
Alignment:
Q  95 ggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaat 144  Q
    |||||||||||||||||| ||| ||||| |||||||||||||| ||||||    
T  19310342 ggtgtgccacgtggcacatccttattggacaatgttatataacataaaat 19310391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 19310391 - 19310342
Alignment:
Q  65 attttaagttatataacattgcccaatcagggtgtgccacgtggcacacc 114  Q
    |||||| |||||||||||||| ||||| ||| ||||||||||||||||||    
T  19310391 attttatgttatataacattgtccaataaggatgtgccacgtggcacacc 19310342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 1e-27; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 43159352 - 43159418
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  43159352 agggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 43159418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 43159418 - 43159352
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43159418 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccct 43159352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 38250105 - 38250171
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  38250105 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccct 38250171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 38250171 - 38250105
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38250171 agggtgtgccatgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 38250105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 38255472 - 38255538
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||    
T  38255472 agggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatccactatgttacaca 38255538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 38255538 - 38255472
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38255538 tgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccct 38255472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 43154102 - 43154168
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  43154102 tgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccct 43154168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 43154168 - 43154102
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||    
T  43154168 agggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatccactatgttacaca 43154102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 22492411 - 22492473
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgtta 155  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22492411 agggtgtgccacgtggcacatcctgattgggcaatgttatataacttaaaatacccaatgtta 22492473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 22492473 - 22492411
Alignment:
Q  54 taacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22492473 taacattgggtattttaagttatataacattgcccaatcaggatgtgccacgtggcacaccct 22492411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 22489252 - 22489318
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||| | ||||||||||    
T  22489252 tgtgtaacattgggtattttaagttatataacattgttcaatcagggtgtgccatgcggcacaccct 22489318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 22489318 - 22489252
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||||| | ||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  22489318 agggtgtgccgcatggcacaccctgattgaacaatgttatataacttaaaatacccaatgttacaca 22489252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 48944292 - 48944356
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacacc 114  Q
    |||||||||||||  |||||| ||||||||||||||  || ||||||||||||||||||||||||    
T  48944292 tgtgtaacattggacattttatgttatataacattgttcagtcagggtgtgccacgtggcacacc 48944356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 48944356 - 48944292
Alignment:
Q  95 ggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||||||||||||||||||| ||  |||||||||||||| ||||||  |||||||||||||    
T  48944356 ggtgtgccacgtggcacaccctgactgaacaatgttatataacataaaatgtccaatgttacaca 48944292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 25384068 - 25384134
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  25384068 agggtgtgccacgtggcacaccctgattggaccatgttatataacttaaaatacccaatgttacaca 25384134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 25384134 - 25384068
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  25384134 tgtgtaacattgggtattttaagttatataacatggtccaatcagggtgtgccacgtggcacaccct 25384068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 25482726 - 25482784
Alignment:
Q  58 attgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  25482726 attggatattttaagttatataacattgcccaattaggatgtgccacatggcacaccct 25482784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Complemental strand, 25482784 - 25482726
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaat 151  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||||||||||| |||||    
T  25482784 agggtgtgccatgtggcacatcctaattgggcaatgttatataacttaaaatatccaat 25482726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 25379448 - 25379514
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||| | | |||||| |||||||||||||| ||||| |||||||||||| |||||||||||    
T  25379448 tgtgtaacatagtggattttatgttatataacattgtccaataagggtgtgccacatggcacaccct 25379514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 25379514 - 25379448
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    ||||||||||| |||||||||||| ||||| |||||||||||||| |||||| | | ||||||||||    
T  25379514 agggtgtgccatgtggcacacccttattggacaatgttatataacataaaatccactatgttacaca 25379448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 10292978 - 10293022
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataac 137  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||    
T  10292978 agggtgtgccacgtggcacaccttaattggccaatgttatataac 10293022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 10293022 - 10292978
Alignment:
Q  72 gttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||||||| ||||| | ||||||||||||||||||||||    
T  10293022 gttatataacattggccaattaaggtgtgccacgtggcacaccct 10292978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 25484273 - 25484313
Alignment:
Q  97 tgtgccacgtggcacaccctgattgggcaatgttatataac 137  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  25484273 tgtgccacgtggcacacccttattggacaatgttatataac 25484313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 25484313 - 25484273
Alignment:
Q  72 gttatataacattgcccaatcagggtgtgccacgtggcaca 112  Q
    |||||||||||||| ||||| ||||||||||||||||||||    
T  25484313 gttatataacattgtccaataagggtgtgccacgtggcaca 25484273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 159
Target Start/End: Original strand, 23231600 - 23231664
Alignment:
Q  96 gtgtgcca-cgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||| ||||| ||||| ||||||| ||||||||| |||| ||||||  |||||||||||||    
T  23231600 gtgtgccatcgtggtacaccttgattggacaatgttatgtaacataaaatggccaatgttacaca 23231664  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 23231664 - 23231600
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacg-tggcacac 113  Q
    |||||||||||||  |||||| |||| ||||||||| ||||||| ||||| ||||| ||||||||    
T  23231664 tgtgtaacattggccattttatgttacataacattgtccaatcaaggtgtaccacgatggcacac 23231600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 3e-25; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 11318766 - 11318832
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11318766 agggtgtgccatgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 11318832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 11318832 - 11318766
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  11318832 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccct 11318766  T

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Target: chr1; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 11476787 - 11476853
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11476787 agggtgtgccatgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 11476853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 11476853 - 11476787
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  11476853 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacatggcacaccct 11476787  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 28244199 - 28244267
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacg--tggcacaccct 116  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  28244199 tgtgtaacattgggtattttaagttatataacattgtccaatcagggtgtgccacgtatggcacaccct 28244267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 28244267 - 28244199
Alignment:
Q  93 agggtgtgcca--cgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28244267 agggtgtgccatacgtggcacaccctgattggacaatgttatataacttaaaatacccaatgttacaca 28244199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 11471322 - 11471388
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||| | | ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11471322 tgtgtaacatagtggattttaagttatataacattgtccaatcagggtgtgccacgtggcacaccct 11471388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 11471388 - 11471322
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| | | ||||||||||    
T  11471388 agggtgtgccacgtggcacaccctgattggacaatgttatataacttaaaatccactatgttacaca 11471322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 17430769 - 17430834
Alignment:
Q  50 tgtgtaacattgggt-attttaagttatataacattgcccaatcagggtgtgccacgtggcacacc 114  Q
    ||||||||||||||  |||||| ||||||||| |||| ||||||||| ||||||||||||||||||    
T  17430769 tgtgtaacattggggcattttatgttatataatattgtccaatcaggatgtgccacgtggcacacc 17430834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 159
Target Start/End: Complemental strand, 17430834 - 17430769
Alignment:
Q  95 ggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaat-acccaatgttacaca 159  Q
    |||||||||||||||||| ||||||||| |||| ||||||||| ||||||  ||||||||||||||    
T  17430834 ggtgtgccacgtggcacatcctgattggacaatattatataacataaaatgccccaatgttacaca 17430769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 17431708 - 17431757
Alignment:
Q  95 ggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaat 144  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||||||    
T  17431708 ggtgtgccacatggcacaccctgattggacaatgttatataacataaaat 17431757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 17431757 - 17431708
Alignment:
Q  65 attttaagttatataacattgcccaatcagggtgtgccacgtggcacacc 114  Q
    |||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  17431757 attttatgttatataacattgtccaatcagggtgtgccatgtggcacacc 17431708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 50017608 - 50017674
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||| | | |||||| |||||||||||||| ||||| ||| | ||||||||||||||||||    
T  50017608 tgtgtaacatagtggattttatgttatataacattgtccaataaggatatgccacgtggcacaccct 50017674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 159
Target Start/End: Complemental strand, 50017674 - 50017608
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||||||||||||| | ||| ||||| |||||||||||||| |||||| | | ||||||||||    
T  50017674 agggtgtgccacgtggcatatccttattggacaatgttatataacataaaatccactatgttacaca 50017608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 50027519 - 50027566
Alignment:
Q  97 tgtgccacgtggcacaccctgattgggcaatgttatataacttaaaat 144  Q
    |||||||||||||||||| |||||||||||| ||| ||||| ||||||    
T  50027519 tgtgccacgtggcacaccttgattgggcaatattacataacataaaat 50027566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 50027566 - 50027519
Alignment:
Q  65 attttaagttatataacattgcccaatcagggtgtgccacgtggcaca 112  Q
    |||||| ||||| ||| |||||||||||| ||||||||||||||||||    
T  50027566 attttatgttatgtaatattgcccaatcaaggtgtgccacgtggcaca 50027519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 48792819 - 48792880
Alignment:
Q  50 tgtgtaacattgggtattttaagttatataacattgcccaatcagggtgtgccacgtggcac 111  Q
    ||||||||||||   |||||| | ||||||||||||||||||||||||||||||||||||||    
T  48792819 tgtgtaacattgaccattttatggtatataacattgcccaatcagggtgtgccacgtggcac 48792880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 48792880 - 48792819
Alignment:
Q  98 gtgccacgtggcacaccctgattgggcaatgttatataacttaaaatacccaatgttacaca 159  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||   ||||||||||||    
T  48792880 gtgccacgtggcacaccctgattgggcaatgttatataccataaaatggtcaatgttacaca 48792819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 135
Target Start/End: Original strand, 48796046 - 48796086
Alignment:
Q  95 ggtgtgccacgtggcacaccctgattgggcaatgttatata 135  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48796046 ggtgtgccacgtggcacaccctgattgggcaatgttatata 48796086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 48796086 - 48796046
Alignment:
Q  74 tatataacattgcccaatcagggtgtgccacgtggcacacc 114  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  48796086 tatataacattgcccaatcagggtgtgccacgtggcacacc 48796046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 114
Target Start/End: Original strand, 28166913 - 28166976
Alignment:
Q  52 tgtaacattgggtattttaa-gttatataacattgcccaatcagggtgtgccacgtggcacacc 114  Q
    ||||||||||||  |||||| |||||||||||||| | ||||||||||||||||||||||||||    
T  28166913 tgtaacattgggggttttaatgttatataacattggcgaatcagggtgtgccacgtggcacacc 28166976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 28166976 - 28166913
Alignment:
Q  95 ggtgtgccacgtggcacaccctgattgggcaatgttatataac-ttaaaatacccaatgttaca 157  Q
    |||||||||||||||||||||||||| | |||||||||||||| ||||||  ||||||||||||    
T  28166976 ggtgtgccacgtggcacaccctgattcgccaatgttatataacattaaaacccccaatgttaca 28166913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 159
Target Start/End: Original strand, 28167595 - 28167662
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataac-ttaaaatacccaatgttacaca 159  Q
    ||||||||| |||||||||||||||||| | |||||||||||||| ||||||  ||||||||||||||    
T  28167595 agggtgtgcgacgtggcacaccctgattcgccaatgttatataacattaaaacccccaatgttacaca 28167662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 28167662 - 28167595
Alignment:
Q  50 tgtgtaacattgggtattttaa-gttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    ||||||||||||||  |||||| |||||||||||||| | |||||||||||||||||| |||||||||    
T  28167662 tgtgtaacattgggggttttaatgttatataacattggcgaatcagggtgtgccacgtcgcacaccct 28167595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 54362234 - 54362297
Alignment:
Q  54 taacattgggtattttaa-gttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    |||||||||| ||||| | |||||||||||||||| |||||||||||||||| |||||||||||    
T  54362234 taacattgggcatttttatgttatataacattgcctaatcagggtgtgccacatggcacaccct 54362297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 54362297 - 54362234
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataac-ttaaaatacccaatgtta 155  Q
    ||||||||||| |||||||||||||||| |||||||||||||||| | ||||| ||||||||||    
T  54362297 agggtgtgccatgtggcacaccctgattaggcaatgttatataacataaaaatgcccaatgtta 54362234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 116
Target Start/End: Original strand, 33862375 - 33862425
Alignment:
Q  66 ttttaagttatataacattgcccaatcagggtgtgccacgtggcacaccct 116  Q
    ||||| ||||||||||| |||||| |||||||||||||| |||||||||||    
T  33862375 ttttatgttatataacactgcccattcagggtgtgccacatggcacaccct 33862425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 93 - 143
Target Start/End: Complemental strand, 33862425 - 33862375
Alignment:
Q  93 agggtgtgccacgtggcacaccctgattgggcaatgttatataacttaaaa 143  Q
    ||||||||||| |||||||||||||| |||||| ||||||||||| |||||    
T  33862425 agggtgtgccatgtggcacaccctgaatgggcagtgttatataacataaaa 33862375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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