View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17486_high_1_N (Length: 345)
Name: NF17486_high_1_N
Description: NF17486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17486_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 10194224 - 10194538
Alignment:
| Q |
1 |
attccaggcatcctgatatcaggatcaaggaattcgaactcatctgttactgaacatgccgcctaacagtgtttgatcataaatcgcaaattataattga |
100 |
Q |
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| T |
10194224 |
attccaggcatcctgatatcaggatcaaggaattcgaactcatctgttactgaacatgcagcctaacagtgtttgatcataaatcgcaaattataattga |
10194323 |
T |
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| Q |
101 |
ca---------agaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtcgttcatcatatttatctttaaatgcgttacttattc |
191 |
Q |
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| T |
10194324 |
caagaaaaaccagaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatatttatctttaaatgcgttacttattc |
10194423 |
T |
|
| Q |
192 |
aaaatcgaatg-atgatgtccatctcattgtccagcacagctcatctcaatacaatagcttttgattaaaacaccgtttaaatccactaaagctaatcag |
290 |
Q |
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||||| ||||| | | |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10194424 |
aaaatagaatgctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgtttaaatccactaaagctaatcag |
10194523 |
T |
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| Q |
291 |
caaaatcacaggttc |
305 |
Q |
| |
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||||||||||||||| |
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| T |
10194524 |
caaaatcacaggttc |
10194538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 222 - 305
Target Start/End: Complemental strand, 19459252 - 19459169
Alignment:
| Q |
222 |
ccagcacagctcatctcaatacaatagcttttgattaaaacaccgtttaaatccactaaagctaatcagcaaaatcacaggttc |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||| |
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| T |
19459252 |
ccagcacagctcatctcaatacaatagcttttgattaaaatacggtttaaatccactgaagctaatcagcaaaatcacaggttc |
19459169 |
T |
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