View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_high_1 (Length: 598)
Name: NF17487_high_1
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 62 - 582
Target Start/End: Complemental strand, 43854161 - 43853616
Alignment:
| Q |
62 |
acctaaaacgtcaaattggtcccaatatgtggataacttttattcaattattttgttcaccnnnnnnnnccttaatgaaatatagtaatgaaatattata |
161 |
Q |
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| T |
43854161 |
acctaaaacgtcaaattggtcccaatatgtggataacttttattcaattattttgttcaccaaaaaaaaccttaatgaaatatagtaattaaatattata |
43854062 |
T |
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| Q |
162 |
ttagactttattg---------------------gattgttcttttagttagccttttgagacttgagagattcattcatgccttcactgatgagcttat |
240 |
Q |
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| T |
43854061 |
ttagactttattgtgaaccggtcgtgatgtattggattgttcttttagttagccttttgagacttgagagattcattcatgccttcactgatgagcttat |
43853962 |
T |
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| Q |
241 |
ataatatagtcatttaaacatgttactcatcaataagagggaaaagtatcataattcttccaagtcttactaaattctctatggatccttcgatcatcca |
340 |
Q |
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| T |
43853961 |
ataatatagtcatttaaacatgttactcatcaataagagggaaaagtatcataattcttccaagtcttactaaattctctatggatccttcgatcatcca |
43853862 |
T |
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| Q |
341 |
aggtaaggtacgtgataactatattacaaaggtttctataatatttatgttataccattggtatccatgattttggccctctcataaattccaac----a |
436 |
Q |
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| T |
43853861 |
aggtaaggtacgtgataactatattacaaaggtttctataatatttatgttataccattggtatccatgattttggccctctcataaattccaacatata |
43853762 |
T |
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| Q |
437 |
tatcagcctcaaaattggttagaaacttatttaactattgatttagagatcgattaaatgactgatttagagatccattaaacgaccaaattgaagaatt |
536 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43853761 |
tatcagcctcaaaattggtcagaaacttatttaaatattgatttagagatcgattaaatgagtgatttagagatccattaaacgaccaaattgaagaatt |
43853662 |
T |
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| Q |
537 |
ggtcgctaaatcgttcactaaaccaatctctatttaacttttagta |
582 |
Q |
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| T |
43853661 |
ggttgctaaatcgttcactaaaccaatctctatttaacttttagta |
43853616 |
T |
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