View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_high_12 (Length: 423)
Name: NF17487_high_12
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 22 - 408
Target Start/End: Complemental strand, 42634129 - 42633743
Alignment:
| Q |
22 |
agtgtccttcaagacagcattatggtattggatgaatcatgtgcacaaactcatgaaccaacaaggctttggtgcaacggttagagccattaatggtcga |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42634129 |
agtgtccttcaagacagcattatggtattggatgaatcatgtgcacaatgtcatgaaccaacaaggctttggtgcaacggttagagccattaatggtcga |
42634030 |
T |
|
| Q |
122 |
catgaatgtgacggtgttgaccccaacacagttaaggctcgtgttgattactacactcaatattgtagtcaactgggtgttgctcctggtgataagctta |
221 |
Q |
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| T |
42634029 |
cttgaatgtgacggtgttgaccccaacacagttaaggctcgtgttgattactacactcaatattgtagtcaactgggtgttgctcctggtgataagctta |
42633930 |
T |
|
| Q |
222 |
actgctaagctagcaatccatacaatagattttatagtatttgatttgatgattatatatgtagtatgaataaatgatgtcataatgtataggaaattca |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
42633929 |
actgctaagctagcaatccatacaatagattttatagtatttgatttgatgattatatatgtattatgaataaatgatgtcataatgtataggcaattca |
42633830 |
T |
|
| Q |
322 |
taaaatcaaatcatcaaatatgttagataataaagtaatgggctatgttattggctctgttagtttagagtcaattgggttttatat |
408 |
Q |
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| T |
42633829 |
tcaaatcaaatcatcaaatatgttagataataaagtaatgagctatgttatttgctctgttagtttagagtcaattgggttttatat |
42633743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 83 - 321
Target Start/End: Complemental strand, 42628549 - 42628310
Alignment:
| Q |
83 |
caaggctttggtgcaacggttagagccattaatggtcgacatgaatgtgacggtgttgaccccaacacagttaaggctcgtgttgattactacactcaat |
182 |
Q |
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| T |
42628549 |
caaggctttggtgcaaccactagagccattaatggtcgacttgaatgtgatggtgctaagccaactacagttcagactcgtgttggttgctacactcaat |
42628450 |
T |
|
| Q |
183 |
attgtagtcaactgggtgttgctcctggtgataagcttaactgctaagctagcaatccatacaatagattttatagtatttgatttgatgattatatatg |
282 |
Q |
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||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42628449 |
attgtagtcaattgggtgttgctcctggtgataagcttactttctaagctagcaatccatacaatagattttatagtatttgatttgatgattatatatg |
42628350 |
T |
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| Q |
283 |
tag-tatgaataaatgatgtcataatgtataggaaattca |
321 |
Q |
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||| ||||||||||||| |||||||||||| | |||||| |
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| T |
42628349 |
tagcaatgaataaatgatatcataatgtatacgcaattca |
42628310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 17 - 248
Target Start/End: Complemental strand, 42639211 - 42638983
Alignment:
| Q |
17 |
cctacagtgtccttcaagacagcattatggtattggatgaatcatgtgcacaaactcatgaaccaacaaggctttggtgcaacggttagagccattaatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||| |||| |||||| || ||||||||||| ||||||||||||||| |
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| T |
42639211 |
cctacagtgtccttcaagacagcattatggtattggatgaataacgtgcacggtgtcatcaaccaa---ggttttggtgcaaccattagagccattaatg |
42639115 |
T |
|
| Q |
117 |
gtcgacatgaatgtgacggtgttgaccccaacacagttaaggctcgtgttgattactacactcaatattgtagtcaactgggtgttgctcctggtgataa |
216 |
Q |
| |
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|||||| ||||||||| |||| | |||| ||||||| || ||||||||| |||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
42639114 |
gtcgacttgaatgtgatggtgctaacccatccacagttcagactcgtgttggttactacactcaatattgtagtgagttgggtgttgctcctggtgataa |
42639015 |
T |
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| Q |
217 |
gcttaactgctaagctagcaatccatacaata |
248 |
Q |
| |
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|||| |||||||||||| | |||||||||| |
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| T |
42639014 |
ccttacttgctaagctagctagccatacaata |
42638983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 342 - 408
Target Start/End: Complemental strand, 11828017 - 11827951
Alignment:
| Q |
342 |
tgttagataataaagtaatgggctatgttattggctctgttagtttagagtcaattgggttttatat |
408 |
Q |
| |
|
||||||||||||||||||||||||||| |||| | || ||||||||||||||||| |||||||||| |
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| T |
11828017 |
tgttagataataaagtaatgggctatgctattaggcctattagtttagagtcaattaggttttatat |
11827951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 342 - 408
Target Start/End: Original strand, 43516134 - 43516200
Alignment:
| Q |
342 |
tgttagataataaagtaatgggctatgttattggctctgttagtttagagtcaattgggttttatat |
408 |
Q |
| |
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|||| ||||||||| |||||||||||| |||||| |||||||||||||||| ||| |||||||||| |
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| T |
43516134 |
tgtttgataataaaataatgggctatgctattggtcctgttagtttagagtccattaggttttatat |
43516200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 408
Target Start/End: Original strand, 27315252 - 27315318
Alignment:
| Q |
342 |
tgttagataataaagtaatgggctatgttattggctctgttagtttagagtcaattgggttttatat |
408 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| || ||||||| |||| ||| |||||||||| |
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| T |
27315252 |
tgttagataataaagtaatggactatgttattgggcttgctagtttaaagtccatttggttttatat |
27315318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 42780160 - 42780108
Alignment:
| Q |
342 |
tgttagataataaagtaat-gggctatgttattggctctgttagtttagagtc |
393 |
Q |
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|||||||| ||||||| || ||||||||||||||| || |||||||||||||| |
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| T |
42780160 |
tgttagatgataaagttattgggctatgttattgggtccgttagtttagagtc |
42780108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 408
Target Start/End: Complemental strand, 25187089 - 25187023
Alignment:
| Q |
342 |
tgttagataataaagtaatgggctatgttattggctctgttagtttagagtcaattgggttttatat |
408 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||||| ||||||| ||| ||||||||| |
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| T |
25187089 |
tgttagataataaagtatcgggctatgttattgggcctgttagtctagagtccattaagttttatat |
25187023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 342 - 406
Target Start/End: Complemental strand, 52849449 - 52849385
Alignment:
| Q |
342 |
tgttagataataaagtaatgggctatgttattggctctgttagtttagagtcaattgggttttat |
406 |
Q |
| |
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||||||||||||||||| || |||||||||||| ||||||| |||||||| ||| ||||||| |
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| T |
52849449 |
tgttagataataaagtatcggactatgttattgggtctgttaagttagagtccattaagttttat |
52849385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 393
Target Start/End: Complemental strand, 8647098 - 8647045
Alignment:
| Q |
342 |
tgttagataataaagtaatgggctatg--ttattggctctgttagtttagagtc |
393 |
Q |
| |
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||||||||||||||||||||||||||| |||||| || |||||||||||||| |
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| T |
8647098 |
tgttagataataaagtaatgggctatgaactattggatcggttagtttagagtc |
8647045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 408
Target Start/End: Complemental strand, 28064768 - 28064701
Alignment:
| Q |
340 |
tatgttagataataaagtaatgggctatgttattggctctgttagtttagagtcaattgggttttatat |
408 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||| |||||||||||||||| ||| |||||||||| |
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| T |
28064768 |
tatgttaaataataaagtatcaggttatgttattggg-ctgttagtttagagtccattaggttttatat |
28064701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 408
Target Start/End: Original strand, 30435617 - 30435683
Alignment:
| Q |
342 |
tgttagataataaagtaatgggctatgttattggctctgttagtttagagtcaattgggttttatat |
408 |
Q |
| |
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|||||||||||||||||||| |||||| |||||| |||| ||||||||| ||| |||||||||| |
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| T |
30435617 |
tgttagataataaagtaatgagctatgctattgggcctgtcggtttagagttcattaggttttatat |
30435683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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