View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_high_13 (Length: 415)
Name: NF17487_high_13
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 39251179 - 39250801
Alignment:
| Q |
20 |
aatcataggaactaaattgatggatttgacatacttcataaactatttannnnnnnnataaaatttagtcattaaattgaagagaaagtgatagtttaaa |
119 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39251179 |
aatcataggaactaaattgatggatt-gacatacttcataaactatttattttttt-ataaaatttagtcactaaattgaagagaaagtgatagtttaaa |
39251082 |
T |
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| Q |
120 |
gattaaactaatagtttattctnnnnnnnnnnnnnnnnnnnnnnnnntataatgttcttgctctggcccacttttgtgggcaattagttgtctgcatgtc |
219 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39251081 |
gattaaactaatagtttattctaaaaaaattaaaacagaaaaataaatataatgttcttgctctggcccacttttgtgggcaattagttgtctgcatgtc |
39250982 |
T |
|
| Q |
220 |
ttgttggaacgaatgaaaatttagaaaactcctgtaaatgacgcagcaacataaaatgtatcagtgtatctagcttgtttaatttttgtggacaaataaa |
319 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39250981 |
ttgttggaacgaatgaaaatttagaaaactcccgtaaatgacgtagcaacataaaatgtatcagtgtatctagcttgtttaatttttgtggacaaataaa |
39250882 |
T |
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| Q |
320 |
tagcacctgattttctattatatcttgtttatcttttctcttacttcaaacctaaattatatatcagaagtgtttgttagt |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39250881 |
tagcacctgattttctattatatcttgtttatcttttctcttacttcaaacctaaattatatatcagaagtgtttgttagt |
39250801 |
T |
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