View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17487_high_14 (Length: 397)
Name: NF17487_high_14
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 45 - 347
Target Start/End: Complemental strand, 13556462 - 13556164
Alignment:
| Q |
45 |
taacattttccatttttaaaattggaaaactaaaatcaggaattttaaaaatgggaagaccaaaatcgtaatcaaaacaagatcgagcagcaataactgt |
144 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| ||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13556462 |
taacattttccattttaaaaataggaaaactaaaatcacgaactt-aaaaatgggaagaccaagatcgtaatcaaaacaagatcgagcagcaataactgt |
13556364 |
T |
|
| Q |
145 |
atttaatttttggtacgtatctcatggat-gttatgtgaaattagaacaaaaacagaaataattgattcccctcnnnnnnnnnnnnnnttgataatgcta |
243 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13556363 |
atttaattattggtacgtatctcatggatcgttatgtgaaattagaacaaaaacagaaataattgattcccct----aaaaacaaaaattgataatgcta |
13556268 |
T |
|
| Q |
244 |
tttttaataattcttttaatctaatggtcctaaaaatcttttaatcgaaaggttctaaaaattatgatatatacggactttattagtgtgctcctaaaat |
343 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13556267 |
tttttaataattctttaaatctaatggtcctaaaaatcttttaatcgaatggttctaaaaaatatgatatatacggactttattagtgtgctcctaaaat |
13556168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University