View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_high_15 (Length: 356)
Name: NF17487_high_15
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 347
Target Start/End: Complemental strand, 36961165 - 36960836
Alignment:
| Q |
18 |
aaacctttctcaacttattatgaagatcactagctgcagagtttttgctgttatattgaccttgattctgattcactttcttctcttctcttgttgttgt |
117 |
Q |
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| T |
36961165 |
aaacctttctcaacttattatgaagatcactagctgcagagtttttgctgttatattgaccttgattctgattcactttcttctcttctcttgttgttgt |
36961066 |
T |
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| Q |
118 |
gtccaccatgaaccaatgttttcaagaaagacgagattaacaatgtcaagggagcttctatcttcatcttttgcttcttttgcaacaagtggaatcaatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36961065 |
gtccaccatgaaccaatgttttcaagaaagacgagattaacaatgtcaagggagcttctatcttcatcttttgcttcttttgcaacaagtggcatcaatg |
36960966 |
T |
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| Q |
218 |
gtaaaataagtggaagtaagaaacaaaacaggaaagttgtggaaccaagtatgaggatagcaccacctagcatcccaaaccctactcagaacaagtgaga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36960965 |
gtaaaataagtggaagtaagaaacaaaacaggaaagttgtggaaccaagtatgaggatagcaccacctagcatcccaaaccctactcagaacaagtgaga |
36960866 |
T |
|
| Q |
318 |
gtggaatactctctatgatttgctcttctt |
347 |
Q |
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| |||||||||||||||||||||||||||| |
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| T |
36960865 |
gaggaatactctctatgatttgctcttctt |
36960836 |
T |
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