View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_high_17 (Length: 338)
Name: NF17487_high_17
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 85 - 322
Target Start/End: Complemental strand, 30943366 - 30943128
Alignment:
| Q |
85 |
gattgttatcaactcataattatgaagaatcaaatccattcctaacaatgtcttctagaatgacctcccgaacaattcttgtgaaaactaatttaagatc |
184 |
Q |
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| T |
30943366 |
gattgttatcaactcataattatgaagagtcaaatccattcctaacaatgtcttctagaatgacctcccggtcaattcttgtgaaaactaatttaagatc |
30943267 |
T |
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| Q |
185 |
accccaccaatagataaaataattagacaaaac-ccccaatttgttagactttaggtttgaaattgactcataaaatctaagattttactatctgtacta |
283 |
Q |
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| T |
30943266 |
accccaccaatagataaaataattagacaaaaccccccaatttgttagactttatgtttgaaattgactcataaaatctaagattttactatctgtacta |
30943167 |
T |
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| Q |
284 |
gttccactactcatcgaagctaaatatcatctctaagtt |
322 |
Q |
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| T |
30943166 |
gttccactactcatcgaagctaaatatcatctctaagtt |
30943128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 161 - 319
Target Start/End: Original strand, 27562478 - 27562637
Alignment:
| Q |
161 |
tcttgtgaaaactaatttaagatcaccccaccaatagataaaataattagacaaaacccccaatttgttagactttaggtttgaaattgactcat-aaaa |
259 |
Q |
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||||||||||||| ||||||||||||| || ||||||||||| |||||||||||||||||||||||||| | | |||||||||||||||||| |||| |
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| T |
27562478 |
tcttgtgaaaacttatttaagatcacctaacgaatagataaaaggattagacaaaacccccaatttgttaggcatagggtttgaaattgactcatgaaaa |
27562577 |
T |
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| Q |
260 |
tctaagattttactatctgtactagttccactactcatcgaagctaaatatcatctctaa |
319 |
Q |
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| T |
27562578 |
tctaagattttactatctatactagttacactactcatccaagttagatattatcactaa |
27562637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 135
Target Start/End: Original strand, 27562369 - 27562415
Alignment:
| Q |
89 |
gttatcaactcataattatgaagaatcaaatccattcctaacaatgt |
135 |
Q |
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| T |
27562369 |
gttatcaactcacaactatgaagaaacaaatccattcctagcaatgt |
27562415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 311
Target Start/End: Original strand, 29751052 - 29751193
Alignment:
| Q |
170 |
aactaatttaagatcaccccaccaatagataaaataattagacaaaacccccaatttgttagactttaggtttgaaattgactcat-aaaatctaagatt |
268 |
Q |
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|||| |||||||| ||| |||||||| ||||| ||||| ||||||| | | | ||||||||| || | |||||||| ||||||| ||||| |||||| |
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| T |
29751052 |
aacttatttaagaccacatcaccaataaataaagtaatttgacaaaagcac-agtttgttagatttaaagtttgaaagggactcatgaaaataaaagatt |
29751150 |
T |
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| Q |
269 |
ttactatctgtactagttccactactcatcgaagctaaatatc |
311 |
Q |
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| T |
29751151 |
ttactttctatactagttccattactcatccaagttaaatatc |
29751193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 288
Target Start/End: Original strand, 29755221 - 29755320
Alignment:
| Q |
190 |
accaatagataaaataattagacaaaacccccaatttgttagactttaggtttgaaattgactcat-aaaatctaaga-ttttactatctgtactagttc |
287 |
Q |
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|||||||||||||| |||||||||||| |||||| |||||||||| | ||||||| ||||||| ||||| |||| ||||||| ||| ||||||||| |
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| T |
29755221 |
accaatagataaaagaattagacaaaa-tcccaatctgttagacttaggatttgaaagggactcatgaaaataaaagatttttactttctatactagttc |
29755319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 21849532 - 21849461
Alignment:
| Q |
175 |
atttaagatcaccccaccaatagataaaataattagacaaaacccccaatttgttagactttaggtttgaaa |
246 |
Q |
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|||||||||||| |||||| |||| | |||| ||||||| |||||||||||||||||| |||||||||| |
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| T |
21849532 |
atttaagatcacaataccaatcgatagtagaatttgacaaaatccccaatttgttagacttaaggtttgaaa |
21849461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 21857446 - 21857375
Alignment:
| Q |
175 |
atttaagatcaccccaccaatagataaaataattagacaaaacccccaatttgttagactttaggtttgaaa |
246 |
Q |
| |
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|||||||||||| |||||| |||| | |||| ||||||| |||||||||||||||||| |||||||||| |
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| T |
21857446 |
atttaagatcacaataccaatcgatagtagaatttgacaaaatccccaatttgttagacttaaggtttgaaa |
21857375 |
T |
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