View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17487_high_19 (Length: 308)

Name: NF17487_high_19
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17487_high_19
NF17487_high_19
[»] chr2 (26 HSPs)
chr2 (7-289)||(39786167-39786446)
chr2 (155-257)||(16192567-16192670)
chr2 (155-273)||(37897574-37897692)
chr2 (181-273)||(12874705-12874797)
chr2 (158-266)||(40152701-40152808)
chr2 (159-273)||(981056-981169)
chr2 (155-267)||(39159240-39159350)
chr2 (157-273)||(980920-981034)
chr2 (155-267)||(43130288-43130399)
chr2 (156-267)||(25330560-25330671)
chr2 (155-268)||(18509496-18509609)
chr2 (181-233)||(18560521-18560573)
chr2 (158-268)||(16127920-16128030)
chr2 (180-246)||(27847998-27848064)
chr2 (158-267)||(12874825-12874934)
chr2 (159-207)||(27847860-27847908)
chr2 (155-266)||(4921309-4921420)
chr2 (180-222)||(17368860-17368902)
chr2 (158-207)||(16126222-16126271)
chr2 (155-204)||(32483645-32483694)
chr2 (181-254)||(36450606-36450679)
chr2 (155-207)||(7328332-7328383)
chr2 (160-204)||(16126427-16126471)
chr2 (239-267)||(16181407-16181435)
chr2 (181-209)||(35926749-35926777)
chr2 (181-209)||(35926927-35926955)
[»] chr8 (19 HSPs)
chr8 (155-267)||(6906263-6906374)
chr8 (155-267)||(33892035-33892147)
chr8 (156-267)||(9861568-9861679)
chr8 (155-267)||(33892181-33892293)
chr8 (181-280)||(6906405-6906504)
chr8 (156-273)||(31212313-31212430)
chr8 (155-264)||(37037252-37037359)
chr8 (159-265)||(14148833-14148937)
chr8 (155-267)||(15229615-15229727)
chr8 (155-268)||(5879874-5879986)
chr8 (155-204)||(8791915-8791964)
chr8 (155-264)||(29242820-29242928)
chr8 (159-263)||(1047259-1047363)
chr8 (155-207)||(31212489-31212541)
chr8 (155-229)||(20691273-20691346)
chr8 (157-262)||(27503640-27503745)
chr8 (181-273)||(8791735-8791827)
chr8 (156-260)||(10069851-10069955)
chr8 (156-208)||(27503426-27503478)
[»] chr7 (19 HSPs)
chr7 (155-265)||(7760607-7760717)
chr7 (159-267)||(7760742-7760850)
chr7 (156-267)||(29635235-29635345)
chr7 (156-267)||(31198443-31198553)
chr7 (157-264)||(20164620-20164727)
chr7 (155-273)||(21657296-21657414)
chr7 (155-273)||(19105394-19105511)
chr7 (155-267)||(15329856-15329969)
chr7 (156-289)||(37081218-37081349)
chr7 (157-253)||(9686444-9686540)
chr7 (181-273)||(23797183-23797275)
chr7 (156-267)||(12821179-12821289)
chr7 (155-267)||(19105255-19105366)
chr7 (155-226)||(3555364-3555435)
chr7 (159-254)||(31172333-31172428)
chr7 (181-264)||(47741005-47741088)
chr7 (181-226)||(20165027-20165072)
chr7 (155-264)||(35054444-35054553)
chr7 (172-224)||(43725998-43726050)
[»] chr3 (18 HSPs)
chr3 (158-267)||(2928096-2928205)
chr3 (155-267)||(8896012-8896124)
chr3 (155-270)||(28725653-28725770)
chr3 (155-234)||(4304325-4304404)
chr3 (155-268)||(30172070-30172182)
chr3 (155-267)||(4304142-4304254)
chr3 (155-207)||(6931145-6931197)
chr3 (180-267)||(44094287-44094374)
chr3 (157-236)||(30430271-30430350)
chr3 (185-267)||(45404826-45404906)
chr3 (180-267)||(45405046-45405132)
chr3 (181-266)||(30173598-30173683)
chr3 (159-267)||(4475108-4475215)
chr3 (181-264)||(25799473-25799553)
chr3 (155-266)||(4475249-4475360)
chr3 (181-232)||(27614039-27614090)
chr3 (155-217)||(32618981-32619043)
chr3 (155-217)||(43907914-43907975)
[»] chr1 (20 HSPs)
chr1 (155-268)||(16706334-16706447)
chr1 (156-267)||(30748951-30749062)
chr1 (156-267)||(30770402-30770513)
chr1 (155-267)||(14760019-14760130)
chr1 (155-267)||(30746906-30747017)
chr1 (155-267)||(30768357-30768468)
chr1 (155-268)||(35294332-35294445)
chr1 (183-236)||(20171415-20171468)
chr1 (156-236)||(15393145-15393225)
chr1 (155-267)||(22679336-22679448)
chr1 (156-267)||(30746773-30746883)
chr1 (156-267)||(30768224-30768334)
chr1 (158-267)||(22679471-22679580)
chr1 (155-204)||(30749148-30749197)
chr1 (155-204)||(30770599-30770648)
chr1 (161-236)||(13765561-13765636)
chr1 (155-273)||(16706474-16706595)
chr1 (155-232)||(39255608-39255685)
chr1 (189-273)||(8819331-8819414)
chr1 (158-206)||(51900116-51900164)
[»] chr4 (15 HSPs)
chr4 (181-264)||(17431108-17431191)
chr4 (155-267)||(28687460-28687572)
chr4 (155-235)||(33752710-33752790)
chr4 (155-267)||(34665123-34665235)
chr4 (181-270)||(17430738-17430827)
chr4 (158-226)||(53343707-53343775)
chr4 (155-268)||(54164465-54164578)
chr4 (157-253)||(13552821-13552917)
chr4 (155-267)||(54164611-54164723)
chr4 (156-267)||(28687606-28687716)
chr4 (158-216)||(32185283-32185341)
chr4 (181-251)||(39261818-39261887)
chr4 (225-266)||(7395913-7395954)
chr4 (176-224)||(5092974-5093022)
chr4 (180-236)||(32186643-32186699)
[»] chr5 (18 HSPs)
chr5 (159-273)||(13657552-13657666)
chr5 (155-273)||(25906097-25906214)
chr5 (181-264)||(15773715-15773798)
chr5 (157-267)||(25905959-25906069)
chr5 (155-264)||(6843081-6843190)
chr5 (155-267)||(13657694-13657806)
chr5 (155-267)||(24490693-24490804)
chr5 (156-273)||(2344603-2344720)
chr5 (155-207)||(29673290-29673342)
chr5 (155-273)||(17047994-17048111)
chr5 (181-266)||(12272527-12272611)
chr5 (158-267)||(22297764-22297873)
chr5 (156-236)||(38299120-38299200)
chr5 (155-265)||(20510442-20510552)
chr5 (155-205)||(33626007-33626057)
chr5 (155-264)||(38900222-38900330)
chr5 (184-264)||(8086685-8086765)
chr5 (181-273)||(17047880-17047972)
[»] chr6 (11 HSPs)
chr6 (155-264)||(12289979-12290088)
chr6 (158-252)||(13340445-13340539)
chr6 (155-268)||(31298868-31298981)
chr6 (155-264)||(6190568-6190676)
chr6 (156-273)||(34637425-34637541)
chr6 (155-267)||(13340588-13340700)
chr6 (156-267)||(30519681-30519791)
chr6 (155-236)||(31298723-31298804)
chr6 (181-236)||(33599852-33599907)
chr6 (181-267)||(24704332-24704418)
chr6 (155-267)||(34637569-34637681)
[»] scaffold0042 (1 HSPs)
scaffold0042 (155-267)||(30310-30421)
[»] scaffold0007 (1 HSPs)
scaffold0007 (181-225)||(175548-175592)
[»] scaffold0577 (1 HSPs)
scaffold0577 (199-268)||(1650-1719)


Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 39786167 - 39786446
Alignment:
Q  7 tcgaagaatatgtatatagtcattaggtggttgttagtgagtagaaacatagcactgtcgactaagcggtggtagtagtaaccccaataactctcatatt 106  Q
    ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39786167 tcgaaaaaaatgtatatagtcattaggtggttgttagtgagtagaaacatagcactgtcgactaagcggtggtagtagtaaccccaataactctcatatt 39786266  T
Q  107 attataannnnnnnnaaaaataactcacatattattaatannnnnnnnagggttaaataagtaaataatcctattaaatataccaacatttgattttagt 206  Q
    |||||||        |||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39786267 attataattttttttaaaaataactcacatattattaatattttttttagggttaaataagtaaataatcctattaaatataccaacatttgattttagt 39786366  T
Q  207 ctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagtctttgctattaaaacaatagtgt 289  Q
    ||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||    
T  39786367 ctcgctaaaattttccttagacttttggtcattccaaaaatat---tccatgaaattagtctttgctattaaaacaatagtgt 39786446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 257
Target Start/End: Complemental strand, 16192670 - 16192567
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagac-ttttggtcattccaaaaattttcat 253  Q
    ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| ||||||| |||||||| | ||||||||  |||||||| ||||||    
T  16192670 agggttaaataagtaaatagtcctcttaaatatatcaacatttgattttagtctccctaaaatattccttaggctttttggtctctccaaaaaatttcat 16192571  T
Q  254 ccat 257  Q
    ||||    
T  16192570 ccat 16192567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 37897574 - 37897692
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||| |||||  |||  |||||| ||||||||||||||||| || | ||||||| ||||||||  ||| ||||  || |||||||||||||    
T  37897574 agggttaaataaggaaatagccctcctaaatagaccaacatttgattttactccctctaaaatattccttaggttttcggtccctctaaaaattttcatc 37897673  T
Q  255 catgaaattagtctttgct 273  Q
    |||||||||||||| ||||    
T  37897674 catgaaattagtctctgct 37897692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 12874705 - 12874797
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagtctttgct 273  Q
    ||||||||||||||||||||||| ||| |  |||||| | ||||||||||||||||  || ||||| ||||||| ||||||||||||| ||||    
T  12874705 taaatataccaacatttgattttggtccctttaaaatatcccttagacttttggtctctctaaaaaatttcatctatgaaattagtctctgct 12874797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 266
Target Start/End: Original strand, 40152701 - 40152808
Alignment:
Q  158 gttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccat 257  Q
    |||||||||||||||  |||| |||||||||| ||||||| |||||||||   ||||||| ||||||||| |||| |||  ||||||| |||||||| ||    
T  40152701 gttaaataagtaaatggtcct-ttaaatatacaaacattttattttagtcctcctaaaatattccttagattttttgtccctccaaaatttttcatctat 40152799  T
Q  258 gaaattagt 266  Q
    |||||||||    
T  40152800 gaaattagt 40152808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 273
Target Start/End: Complemental strand, 981169 - 981056
Alignment:
Q  159 ttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatg 258  Q
    ||||||||||||||| ||    ||||||||||||||||||||||||||| | ||||||| ||| |||| |||||||||  || |||| |||||||  |||    
T  981169 ttaaataagtaaatagtctctctaaatataccaacatttgattttagtc-ccctaaaatattctttaggcttttggtccctctaaaatttttcatttatg 981071  T
Q  259 aaattagtctttgct 273  Q
    |||||||||| ||||    
T  981070 aaattagtctctgct 981056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 39159350 - 39159240
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||||| |||| |||| |||||||||| |||||||||||||||   |   ||||| ||| ||||  ||||||||  |||||||| |||||||    
T  39159350 agggttaaataagttaatagtcctcttaaatatactaacatttgattttag--ccataaaaatattctttaggattttggtccctccaaaaaatttcatc 39159253  T
Q  255 catgaaattagtc 267  Q
    |||||||||||||    
T  39159252 catgaaattagtc 39159240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 273
Target Start/End: Original strand, 980920 - 981034
Alignment:
Q  157 ggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcca 256  Q
    |||||||||||||||| ||||  ||||||||| |||||||||||||||||| | ||||||| || ||||| |||||||||   | ||||| ||| ||| |    
T  980920 ggttaaataagtaaatgatccctttaaatatatcaacatttgattttagtc-ctctaaaatatttcttaggcttttggtc-ccctaaaaaattttatcta 981017  T
Q  257 tgaaattagtctttgct 273  Q
    |||||||||||| ||||    
T  981018 tgaaattagtctctgct 981034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 43130399 - 43130288
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||  ||    ||||||||||| |||||||||| |||| | | |||||||||||||| |||||||||  ||||||| ||| |||     
T  43130399 agggttaaataagtaaatggtctccctaaatatacca-catttgatttcagtccctccaaaattttccttaggcttttggtccctccaaaattttccatt 43130301  T
Q  255 catgaaattagtc 267  Q
    |||||||||||||    
T  43130300 catgaaattagtc 43130288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 25330560 - 25330671
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||| |||   |||||| | |||||||||||||||||| | ||||||||||| ||||| |||| ||| ||  |||||  |||||      
T  25330560 gggttaaataagtaaatagtccccctaaatacatcaacatttgattttagtccctctaaaattttctttagattttttgtctttataaaaaacttcattt 25330659  T
Q  256 atgaaattagtc 267  Q
    ||||||||||||    
T  25330660 atgaaattagtc 25330671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 268
Target Start/End: Original strand, 18509496 - 18509609
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||| |||||  |||   ||||||||||||||||||||||||||| | ||||||| |||||| |  ||||||||  ||||||| ||| ||||    
T  18509496 agggttaaataattaaatggtccccctaaatataccaacatttgattttagtccctctaaaatattcctttggtttttggtccctccaaaattttccatc 18509595  T
Q  255 catgaaattagtct 268  Q
      | ||||||||||    
T  18509596 tgtaaaattagtct 18509609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 18560521 - 18560573
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttg 233  Q
    |||||||| ||||||||||||||||||||  |||||| |||||||||||||||    
T  18560521 taaatatatcaacatttgattttagtctccttaaaatattccttagacttttg 18560573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 268
Target Start/End: Original strand, 16127920 - 16128030
Alignment:
Q  158 gttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccat 257  Q
    |||||||||||||||| |||  |||||||||||||||||| |||||||||   ||||||| ||   |||  ||||||||  || |||| |||||||  ||    
T  16127920 gttaaataagtaaatagtccccttaaatataccaacatttaattttagtcctcctaaaatattatgtaggtttttggtccctctaaaatttttcatttat 16128019  T
Q  258 gaaattagtct 268  Q
    |||||||||||    
T  16128020 gaaattagtct 16128030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 27848064 - 27847998
Alignment:
Q  180 ttaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaa 246  Q
    ||||||||||||||||||||||||||||||  |||||| || ||||  |||||||||  ||||||||    
T  27848064 ttaaatataccaacatttgattttagtctctttaaaatattacttaagcttttggtccctccaaaaa 27847998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 267
Target Start/End: Complemental strand, 12874934 - 12874825
Alignment:
Q  158 gttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccat 257  Q
    |||||||||||||||| || |   ||||||||||| |||||||||||||| | ||||||| ||  ||||  ||||||||  || |||| |||||||  ||    
T  12874934 gttaaataagtaaatagtcttcccaaatataccaatatttgattttagtccctctaaaatattatttaggtttttggtccctctaaaagttttcatttat 12874835  T
Q  258 gaaattagtc 267  Q
    ||||||||||    
T  12874834 gaaattagtc 12874825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Original strand, 27847860 - 27847908
Alignment:
Q  159 ttaaataagtaaataatcctattaaatataccaacatttgattttagtc 207  Q
    ||||||||||||||| |||   |||||||||||||||||||||||||||    
T  27847860 ttaaataagtaaatagtccccataaatataccaacatttgattttagtc 27847908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 4921420 - 4921309
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||| |||||| ||    |||||||| ||||||||||||||| || |  |||||| ||  ||||| |||| |||  || |||||||||||||    
T  4921420 agggttaaataaataaatagtctctctaaatatatcaacatttgattttaatccccttaaaatattttttagattttttgtccctctaaaaattttcatc 4921321  T
Q  255 catgaaattagt 266  Q
     |||||||||||    
T  4921320 tatgaaattagt 4921309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 17368902 - 17368860
Alignment:
Q  180 ttaaatataccaacatttgattttagtctcgctaaaattttcc 222  Q
    |||||||||||||||||||||||| ||| | ||||||||||||    
T  17368902 ttaaatataccaacatttgattttggtccctctaaaattttcc 17368860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 16126222 - 16126271
Alignment:
Q  158 gttaaataagtaaataatcctattaaatataccaacatttgattttagtc 207  Q
    |||||||||||||| | |||  |||||||||||||||||| |||||||||    
T  16126222 gttaaataagtaaacagtccccttaaatataccaacatttaattttagtc 16126271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 32483645 - 32483694
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgatttta 204  Q
    ||||||||||||||||||||| |  ||||||||||  |||||||||||||    
T  32483645 agggttaaataagtaaataattcctttaaatatactgacatttgatttta 32483694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 36450679 - 36450606
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||| ||| |||||| |||| ||||||||||||||  |||||  |||  || |||||||||||||    
T  36450679 taaatataccaacttttcattttactctctctaaaattttccttcaactttcagtccctcaaaaaattttcatc 36450606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 7328332 - 7328383
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtc 207  Q
    |||||||||||||||||  ||||||| |||||||||| |||||||||| ||||    
T  7328332 agggttaaataagtaaacgatcctat-aaatataccatcatttgatttcagtc 7328383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 16126471 - 16126427
Alignment:
Q  160 taaataagtaaataatcctattaaatataccaacatttgatttta 204  Q
    ||||||||||||| |||||  |||||||||||| |||||||||||    
T  16126471 taaataagtaaatgatcctcataaatataccaaaatttgatttta 16126427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 239 - 267
Target Start/End: Original strand, 16181407 - 16181435
Alignment:
Q  239 tccaaaaattttcatccatgaaattagtc 267  Q
    |||||||||||||||||||||||||||||    
T  16181407 tccaaaaattttcatccatgaaattagtc 16181435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 209
Target Start/End: Original strand, 35926749 - 35926777
Alignment:
Q  181 taaatataccaacatttgattttagtctc 209  Q
    |||||||||||||||||||||||||||||    
T  35926749 taaatataccaacatttgattttagtctc 35926777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 209
Target Start/End: Complemental strand, 35926955 - 35926927
Alignment:
Q  181 taaatataccaacatttgattttagtctc 209  Q
    |||||||||||||||||||||||||||||    
T  35926955 taaatataccaacatttgattttagtctc 35926927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 6906263 - 6906374
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||| |||   |||||||||||||||||||||| |||| |  |||||| |||||||| ||||||||| |||||||| ||||||||    
T  6906263 agggttaaataagtaaatagtccccctaaatataccaacatttgattt-agtccccataaaatattccttaggcttttggtccttccaaaatttttcatc 6906361  T
Q  255 catgaaattagtc 267  Q
    |||||||||||||    
T  6906362 catgaaattagtc 6906374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 33892035 - 33892147
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||| | || |||||||||||||||||||||||||||| |   ||||| ||| ||||  |||||||| ||| |||||||||||||    
T  33892035 agggttaaataagtaaatagttctcttaaatataccaacatttgattttagtcccctcaaaatattctttaggtttttggtccttctaaaaattttcatc 33892134  T
Q  255 catgaaattagtc 267  Q
     ||||||||||||    
T  33892135 tatgaaattagtc 33892147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 9861568 - 9861679
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||| ||||  |||||||| |||||||||||||||||| |  |||||| ||| |||| |||||||||  || |||| |||||||      
T  9861568 gggttaaataagtaaatagtcctcctaaatatatcaacatttgattttagtccctataaaatattctttaggcttttggtccctctaaaatttttcattt 9861667  T
Q  256 atgaaattagtc 267  Q
    ||||||||||||    
T  9861668 atgaaattagtc 9861679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 33892293 - 33892181
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||| |||| | |||||||||||||||||||||||||||| |  |||||| ||| |||   ||||||||  || |||| |||||||     
T  33892293 agggttaaataagtaaacaatcttcttaaatataccaacatttgattttagtccctttaaaatattctttatgtttttggtccctctaaaatttttcatt 33892194  T
Q  255 catgaaattagtc 267  Q
     ||||||||||||    
T  33892193 tatgaaattagtc 33892181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 280
Target Start/End: Complemental strand, 6906504 - 6906405
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagtctttgctattaaaa 280  Q
    ||||||||||||||||||||||||||| |  |||||| ||  |||| |||||| ||  ||||||||||||||||||| |||||||||  |||| ||||||    
T  6906504 taaatataccaacatttgattttagtccccataaaatattttttaggcttttgatccctccaaaaattttcatccattaaattagtccctgctgttaaaa 6906405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 31212313 - 31212430
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||| |||  ||||||||| |||||||||||||||||| |  |||||| ||| |||| |||||||||  || ||||| ||  ||      
T  31212313 gggttaaataagtaaatagtccccttaaatatatcaacatttgattttagtccccataaaatattctttaggcttttggtccctctaaaaaattctattt 31212412  T
Q  256 atgaaattagtctttgct 273  Q
    ||||||||||||| ||||    
T  31212413 atgaaattagtctctgct 31212430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 264
Target Start/End: Complemental strand, 37037359 - 37037252
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||  | ||  ||||||| ||||||||||||||||||| | ||||||| ||||||| ||||||||||  |  |||| ||||||||    
T  37037359 agggttaaataagtaaatggt-cttctaaatattccaacatttgattttagtccctctaaaatattccttatacttttggtccct-taaaatttttcatc 37037262  T
Q  255 catgaaatta 264  Q
    ||||||||||    
T  37037261 catgaaatta 37037252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 14148937 - 14148833
Alignment:
Q  159 ttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatg 258  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||| | |||| || ||  |||| |||||||||  ||||||| |||||||  |||    
T  14148937 ttaaataactaaatgatcct-ttaaatataccaacatttgattttagtccccctaacatattttttaggcttttggtc-ctccaaaatttttcatatatg 14148840  T
Q  259 aaattag 265  Q
    |||||||    
T  14148839 aaattag 14148833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 15229615 - 15229727
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||| | |  |||||||||||||||||| ||||||||| |  |||||| ||| || |||||||| ||  || |||| |||| ||     
T  15229615 agggttaaataagtaaatagttcccttaaatataccaacattttattttagtccctataaaatattcttttgacttttgatccctctaaaattttttatt 15229714  T
Q  255 catgaaattagtc 267  Q
     ||||||||||||    
T  15229715 tatgaaattagtc 15229727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 268
Target Start/End: Original strand, 5879874 - 5879986
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||| ||    ||||||||| || |||||||||||||||  ||||||| || ||||  |||| ||||  || || | ||||||||    
T  5879874 agggttaaataagtaaatagtctccctaaatatactaatatttgattttagtctttctaaaatatttcttaagcttt-ggtccctctaacatttttcatc 5879972  T
Q  255 catgaaattagtct 268  Q
    ||||||||||||||    
T  5879973 catgaaattagtct 5879986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 8791964 - 8791915
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgatttta 204  Q
    ||||||||||||||||||| | || |||||||||| ||||||||||||||    
T  8791964 agggttaaataagtaaatagttctcttaaatatactaacatttgatttta 8791915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 264
Target Start/End: Complemental strand, 29242928 - 29242820
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||  |||  | |||| || |||||||||||||||||| | ||||||  || |||||  ||| ||||  |||||||||||||||     
T  29242928 agggttaaataagtaaattgtcccctaaaat-tatcaacatttgattttagtccctctaaaaaatttcttaggttttcggtccctccaaaaattttcatt 29242830  T
Q  255 catgaaatta 264  Q
    ||||||||||    
T  29242829 catgaaatta 29242820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 1047259 - 1047363
Alignment:
Q  159 ttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatg 258  Q
    ||||||||||||||  || |  ||||||||| || |||| |||||| ||   ||||||  ||||||||||||||||||  || ||||| |||||||||||    
T  1047259 ttaaataagtaaatggtcttcctaaatatactaatattttattttaatcctcctaaaacattccttagacttttggtccctcaaaaaaatttcatccatg 1047358  T
Q  259 aaatt 263  Q
    |||||    
T  1047359 aaatt 1047363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 31212541 - 31212489
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtc 207  Q
    ||||||||||||||||||| ||    |||||||||||||||||||||||||||    
T  31212541 agggttaaataagtaaatagtctccctaaatataccaacatttgattttagtc 31212489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 229
Target Start/End: Original strand, 20691273 - 20691346
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagact 229  Q
    ||||||||||||||||||   ||  ||||||||||||| ||||||||||| || | ||||||| |||||||||||    
T  20691273 agggttaaataagtaaatggcccc-ttaaatataccaaaatttgattttattccccctaaaatattccttagact 20691346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 262
Target Start/End: Complemental strand, 27503745 - 27503640
Alignment:
Q  157 ggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcca 256  Q
    |||||||||||||||| || |  ||||||||| ||| ||||||||||||| ||  |||||| ||  |||| |||||||||  ||  ||| ||||||| ||    
T  27503745 ggttaaataagtaaatgattcacttaaatatatcaatatttgattttagtttccataaaatattatttaggcttttggtccctctgaaatttttcattca 27503646  T
Q  257 tgaaat 262  Q
    ||||||    
T  27503645 tgaaat 27503640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 8791735 - 8791827
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagtctttgct 273  Q
    |||||||| ||||||||||||||| || | | ||||| ||  ||||  ||||||||  || |||| |||||||| ||||||||||||| ||||    
T  8791735 taaatatatcaacatttgattttactcaccccaaaatatttgttaggtttttggtccctctaaaatttttcatctatgaaattagtctctgct 8791827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 260
Target Start/End: Original strand, 10069851 - 10069955
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||| ||||||||||  ||| | ||||| ||||||||||| ||||||  | | ||||||| ||| ||||  |||||||| ||| |||| ||||||||     
T  10069851 gggttacataagtaaatgttcccactaaatgtaccaacatttaattttaacccctctaaaatattctttaggattttggtccttctaaaatttttcatct 10069950  T
Q  256 atgaa 260  Q
    |||||    
T  10069951 atgaa 10069955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 27503426 - 27503478
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtct 208  Q
    ||||||||||||||| | |||||  |||||||| ||||||||| |||||||||    
T  27503426 gggttaaataagtaagtgatcctcctaaatatatcaacatttgcttttagtct 27503478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 155 - 265
Target Start/End: Original strand, 7760607 - 7760717
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||||||||  ||||||||||| ||| ||||||||||| | ||||||| ||| |||| |||||||||  ||||||| | ||||||    
T  7760607 agggttaaataagtaaataatccttctaaatataccagcatatgattttagtccccctaaaatattctttaggcttttggtccctccaaaattgttcatc 7760706  T
Q  255 catgaaattag 265  Q
    |||||||||||    
T  7760707 catgaaattag 7760717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 159 - 267
Target Start/End: Complemental strand, 7760850 - 7760742
Alignment:
Q  159 ttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatg 258  Q
    ||||||||||||||| | |   ||||||||||||||||||||||||||| |  |||||| || ||||| |||||||||  ||||||||||||||||||||    
T  7760850 ttaaataagtaaatagttcccctaaatataccaacatttgattttagtccctataaaatatttcttaggcttttggtccctccaaaaattttcatccatg 7760751  T
Q  259 aaattagtc 267  Q
    |||||||||    
T  7760750 aaattagtc 7760742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 29635235 - 29635345
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||  |||   |||||||| |||||||||||||||||| | ||||||| ||||||||||||||||||  || |||| ||||||| |    
T  29635235 gggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtccc-ctaaaatattccttagacttttggtccctctaaaatttttcatac 29635333  T
Q  256 atgaaattagtc 267  Q
    ||| ||||||||    
T  29635334 atgtaattagtc 29635345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 267
Target Start/End: Complemental strand, 31198553 - 31198443
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttag-tctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||||||||| |||  |||||||||||||||||||||||||| |||| ||||||| || ||||| ||||||| |  || |||| ||||||||    
T  31198553 gggttaaataagtaaatagtccctttaaatataccaacatttgattttagttctc-ctaaaatatttcttaggcttttgg-ccctctaaaatttttcatc 31198456  T
Q  255 catgaaattagtc 267  Q
     ||||||||||||    
T  31198455 tatgaaattagtc 31198443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 157 - 264
Target Start/End: Original strand, 20164620 - 20164727
Alignment:
Q  157 ggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcca 256  Q
    ||||||||||||||||  |||  | ||||||||||||||||||||||||||    ||||||||||||||   ||||||||  ||||||| ||||||| ||    
T  20164620 ggttaaataagtaaatggtcccctaaaatataccaacatttgattttagtcattttaaaattttccttaagtttttggtccctccaaaatttttcattca 20164719  T
Q  257 tgaaatta 264  Q
    ||||||||    
T  20164720 tgaaatta 20164727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 273
Target Start/End: Original strand, 21657296 - 21657414
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgct-aaaattttccttagacttttggtcattccaaaaattttcat 253  Q
    ||||||||||||||||||  ||||  |||||||| |||||||| | ||||| ||| || ||||| ||| |||||||||||||  ||| ||||||||||||    
T  21657296 agggttaaataagtaaatggtcctcctaaatatatcaacatttaactttag-ctcccttaaaatattctttagacttttggttcttcaaaaaattttcat 21657394  T
Q  254 ccatgaaattagtctttgct 273  Q
      ||||||||||||| ||||    
T  21657395 ttatgaaattagtctctgct 21657414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 155 - 273
Target Start/End: Complemental strand, 19105511 - 19105394
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||| |||   ||||||||||||| ||||||||||||| |  |||| | ||| |||| |||||||||  | | |||||||||||     
T  19105511 agggttaaataagtaaatagtccccctaaatataccaacttttgattttagtccccttaaactattctttaggcttttggtccct-ctaaaattttcatt 19105413  T
Q  255 catgaaattagtctttgct 273  Q
     ||||||||||||| ||||    
T  19105412 tatgaaattagtctatgct 19105394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 15329856 - 15329969
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttcctt-agacttttggtcattccaaaaattttcat 253  Q
    ||||||||||| | ||||| |||  |||||||||||||||||||||||||||| | | || || || ||| ||  ||||||||  |||||||||||||||    
T  15329856 agggttaaatatggaaatagtccccttaaatataccaacatttgattttagtcccccaaagatattacttaaggtttttggtccatccaaaaattttcat 15329955  T
Q  254 ccatgaaattagtc 267  Q
    | ||||||| ||||    
T  15329956 ctatgaaataagtc 15329969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 289
Target Start/End: Complemental strand, 37081349 - 37081218
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||| |||  | ||||||| |||| ||||||||||||| | | ||||| ||||||||  ||||||||  | | |||||||||||      
T  37081349 gggttaaataagtaaatattcccct-aaatatatcaacgtttgattttagtcccccaaaaatattccttaggtttttggtccct-ctaaaattttcattt 37081252  T
Q  256 atgaaattagtctttgctattaaaacaatagtgt 289  Q
    |||||||||||| || || |||||| ||||||||    
T  37081251 atgaaattagtcctttctgttaaaaaaatagtgt 37081218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 9686540 - 9686444
Alignment:
Q  157 ggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcat 253  Q
    ||||||||||||||||| ||||  |||||||| ||| |||||||||||||| |  |||||| ||  |||| ||||||||| ||| |||| |||||||    
T  9686540 ggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattatttaggcttttggtccttctaaaatttttcat 9686444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 181 - 273
Target Start/End: Complemental strand, 23797275 - 23797183
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagtctttgct 273  Q
    |||||||| |||||||||||||||||| | ||||||| || |||||| ||||||||  || |||| |||| |||||| ||||| |||| ||||    
T  23797275 taaatatatcaacatttgattttagtccctctaaaatatttcttagatttttggtccctctaaaactttttatccattaaattggtctctgct 23797183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 12821179 - 12821289
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||  |||  |||||||||||||| |||||||||| || | ||||||| ||  |||| ||||||||   | | ||||||||||||     
T  12821179 gggttaaataagtaaatggtccccttaaatataccaacgtttgattttaatccccctaaaatattttttaggcttttggttcct-ctaaaattttcatct 12821277  T
Q  256 atgaaattagtc 267  Q
    ||||||||||||    
T  12821278 atgaaattagtc 12821289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 19105255 - 19105366
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||||||||  ||||   ||||||||| |||||| |||||||||| | ||||||| ||| |||| |||||||||  || | || |||||||     
T  19105255 agggttaaataagtaaaagatccgcataaatatactaacattcgattttagtc-ctctaaaatattctttaggcttttggtccctctataatttttcatt 19105353  T
Q  255 catgaaattagtc 267  Q
     ||||||||||||    
T  19105354 tatgaaattagtc 19105366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 3555364 - 3555435
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttag 226  Q
    ||||||||||||| ||||  |||   ||||||||||||||||||||||||||| | ||||||| || |||||    
T  3555364 agggttaaataagcaaatggtccccctaaatataccaacatttgattttagtccccctaaaatatttcttag 3555435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 254
Target Start/End: Complemental strand, 31172428 - 31172333
Alignment:
Q  159 ttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||||| ||||  |||||||||| |||||||||||||| ||   ||||||| ||  ||||  ||||||||  || |||||||||||||    
T  31172428 ttaaataagtaaatgatccctttaaatatacaaacatttgattttaatcctcctaaaatattttttaggtttttggtccctctaaaaattttcatc 31172333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 47741088 - 47741005
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaatta 264  Q
    ||||||||||||||||| |||| |||| | | ||||| || ||||| |||||| || ||||||||| ||| || ||||||||||    
T  47741088 taaatataccaacatttaatttcagtcccccaaaaatatttcttaggcttttgctccttccaaaaaatttaattcatgaaatta 47741005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 20165072 - 20165027
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttag 226  Q
    ||||||||||||||||||||||||||| | ||||||| ||| ||||    
T  20165072 taaatataccaacatttgattttagtccctctaaaatattcattag 20165027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 264
Target Start/End: Original strand, 35054444 - 35054553
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||| | ||  ||||||||| ||||||| |||||  || |  |||||| ||| |||||||||||||   || |||||| || |||    
T  35054444 agggttaaataagtaaatagttcttctaaatatactaacatttaattttgatccctttaaaatattctttagacttttggttcctctaaaaatatttatc 35054543  T
Q  255 catgaaatta 264  Q
    ||| ||||||    
T  35054544 cataaaatta 35054553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 43726050 - 43725998
Alignment:
Q  172 taatcctattaaatataccaacatttgattttagtctcgctaaaattttcctt 224  Q
    |||||||  ||||||||||||| |||  |||||||||| ||||||||||||||    
T  43726050 taatccttataaatataccaacttttcgttttagtctctctaaaattttcctt 43725998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 158 - 267
Target Start/End: Original strand, 2928096 - 2928205
Alignment:
Q  158 gttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccat 257  Q
    |||||||||||||||  ||||  ||||||||||||||||||||| ||||| | |||||||||||||||| |||||||||  ||||||| ||| ||| |||    
T  2928096 gttaaataagtaaatggtcctcctaaatataccaacatttgattctagtccctctaaaattttccttaggcttttggtccctccaaaattttccattcat 2928195  T
Q  258 gaaattagtc 267  Q
    ||||||||||    
T  2928196 gaaattagtc 2928205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 8896124 - 8896012
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||||||| | ||| | ||||||| |||||||||| ||||||||||| ||||||| ||| |||  |||||||||  |  ||||| ||||||     
T  8896124 agggttaaataagtaagtgatcatcttaaatacaccaacatttaattttagtctccctaaaatattctttaagcttttggtctctttaaaaaatttcatt 8896025  T
Q  255 catgaaattagtc 267  Q
    |||||||||||||    
T  8896024 catgaaattagtc 8896012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 270
Target Start/End: Complemental strand, 28725770 - 28725653
Alignment:
Q  155 agggttaaataagtaaataatcctattaaat---ataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttc 251  Q
    ||||||||||||||||||  |||   |||||   |||||||||||||||||||||||| | ||||| ||| ||||  ||||||||  |||||||| ||||    
T  28725770 agggttaaataagtaaatggtccccctaaatataataccaacatttgattttagtctc-ccaaaatattcattaggtttttggtccctccaaaaaatttc 28725672  T
Q  252 atccatgaaattagtcttt 270  Q
    |||||||||||||||||||    
T  28725671 atccatgaaattagtcttt 28725653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 234
Target Start/End: Complemental strand, 4304404 - 4304325
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttgg 234  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||||||| | ||||||| ||| ||||| ||||||    
T  4304404 agggttaaataagtaaataatctccctaaatataccaacatttgattttagtccctctaaaatattcattagatttttgg 4304325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 268
Target Start/End: Original strand, 30172070 - 30172182
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||  |||   |||||||| |||||||||||||||||| |  |||||| ||| ||||  |||||||  || ||||| ||||||||    
T  30172070 agggttaaataagtaaatggtccccctaaatatatcaacatttgattttagtccccttaaaatattctttaggtttttggtt-ttacaaaatttttcatc 30172168  T
Q  255 catgaaattagtct 268  Q
    ||||||||||||||    
T  30172169 catgaaattagtct 30172182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 4304142 - 4304254
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||| |||||  |||  ||||||||||||||||||||||||||||   ||||||| || ||||  ||||||||| ||| |||| ||| |||     
T  4304142 agggttaaataaataaatcgtccccttaaatataccaacatttgattttagtcctcctaaaatatttcttaagcttttggtccttctaaaattttacata 4304241  T
Q  255 catgaaattagtc 267  Q
     ||||||||||||    
T  4304242 tatgaaattagtc 4304254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 6931197 - 6931145
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtc 207  Q
    ||||||||||||||||||| |||| |||||||||| |||||||||||||||||    
T  6931197 agggttaaataagtaaatagtcctcttaaatatactaacatttgattttagtc 6931145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 44094374 - 44094287
Alignment:
Q  180 ttaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagtc 267  Q
    ||||||||| ||||||||||||||||||||   ||||| || |||||  ||||||||  |||||||| ||| ||||||||||||||||    
T  44094374 ttaaatatatcaacatttgattttagtctcctgaaaatatttcttagggttttggtccctccaaaaaattttatccatgaaattagtc 44094287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 30430271 - 30430350
Alignment:
Q  157 ggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtc 236  Q
    ||||||||||||||||  |||   ||||||||||||||||||||||||||  | ||||||| ||| |||| |||||||||    
T  30430271 ggttaaataagtaaatggtccctctaaatataccaacatttgattttagttcctctaaaatattctttaggcttttggtc 30430350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 45404826 - 45404906
Alignment:
Q  185 tataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagtc 267  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||| || |||||  |||||||  || ||||||| |||||||||    
T  45404826 tatacaaacatttgattttagtctccctaaaatattccttagatttctggtccctccaaaa--ttccatccataaaattagtc 45404906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 45405132 - 45405046
Alignment:
Q  180 ttaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagtc 267  Q
    |||||||||| ||||||||||||||||| | ||||||| ||| |||| ||||| |||  ||| |||||||| ||| ||||||||||||    
T  45405132 ttaaatatactaacatttgattttagtccccctaaaatattctttaggcttttagtccctcc-aaaatttttatctatgaaattagtc 45405046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 266
Target Start/End: Complemental strand, 30173683 - 30173598
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagt 266  Q
    |||||||||||| |||||||||||||| | ||||||||||| |||| |||||| ||  || |||| |||  ||| |||||||||||    
T  30173683 taaatataccaatatttgattttagtccccctaaaattttctttaggcttttgatccctctaaaattttatatctatgaaattagt 30173598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 4475108 - 4475215
Alignment:
Q  159 ttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatg 258  Q
    ||||||||||||| | ||||  |||||||||||||||||||||||| |  | ||||||| ||| ||||  ||||  || ||  ||||||||||||| |||    
T  4475108 ttaaataagtaaaaagtcctcctaaatataccaacatttgattttaattcccctaaaatattctttagggttttaatcctt-taaaaattttcatctatg 4475206  T
Q  259 aaattagtc 267  Q
    |||||||||    
T  4475207 aaattagtc 4475215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 25799553 - 25799473
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaatta 264  Q
    ||||||||||||||||| |||||||||||  |||||| |||  |||||||||||||  | | ||||||||||||| ||||||||    
T  25799553 taaatataccaacatttaattttagtctctttaaaatattc--tagacttttggtccctgc-aaaattttcatccgtgaaatta 25799473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 4475360 - 4475249
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||| || ||||| | ||  |||||||| ||||||||||||||| || |  |||||||||| ||||  ||||| || ||| |||| |||| |||    
T  4475360 agggttaaattagaaaatagtgctcctaaatatatcaacatttgattttaatcactttaaaattttctttaggtttttgatccttctaaaattttttatc 4475261  T
Q  255 catgaaattagt 266  Q
     |||||||||||    
T  4475260 tatgaaattagt 4475249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 27614039 - 27614090
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagactttt 232  Q
    ||||||||||||||||| |||||||||||  |||||| ||| ||||||||||    
T  27614039 taaatataccaacatttaattttagtctccataaaatattctttagactttt 27614090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 32619043 - 32618981
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaat 217  Q
    ||||||||||||||||||| | |   |||||||| |||||||||||||||||||  |||||||    
T  32619043 agggttaaataagtaaatagttcatctaaatatatcaacatttgattttagtctttctaaaat 32618981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 43907975 - 43907914
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaat 217  Q
    |||||||||||||||||| ||||  |||||||||| || |||||||||||||| | |||||||    
T  43907975 agggttaaataagtaaatgatccc-ttaaatatactaatatttgattttagtccccctaaaat 43907914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 268
Target Start/End: Original strand, 16706334 - 16706447
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||| || ||||| |||   ||||||||||||||||||||||||||| | ||||||||||| |||| ||||||||| ||| |||| ||||||||    
T  16706334 agggttaaatgagaaaatattccctctaaatataccaacatttgattttagtccctctaaaattttctttaggcttttggtccttctaaaatttttcatc 16706433  T
Q  255 catgaaattagtct 268  Q
     |||||||||||||    
T  16706434 tatgaaattagtct 16706447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 30748951 - 30749062
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||  ||||  ||||||||| || |||||||||||||| | ||||||| ||| |||| |||||||||  | ||||| ||||||||     
T  30748951 gggttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatattctttaggcttttggtcccttcaaaatttttcatct 30749050  T
Q  256 atgaaattagtc 267  Q
    ||||||||||||    
T  30749051 atgaaattagtc 30749062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 30770402 - 30770513
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||  ||||  ||||||||| || |||||||||||||| | ||||||| ||| |||| |||||||||  | ||||| ||||||||     
T  30770402 gggttaaataagtaaatggtcctcctaaatatacaaatatttgattttagtccccctaaaatattctttaggcttttggtcccttcaaaatttttcatct 30770501  T
Q  256 atgaaattagtc 267  Q
    ||||||||||||    
T  30770502 atgaaattagtc 30770513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 14760130 - 14760019
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||||| || | ||||||| ||  |||| |||||||||   | |||| ||||||||    
T  14760130 agggttaaataagtaaatgatccccttaaatataccaacatttgattttaatccccctaaaatattttttaggcttttggtc-ccctaaaatttttcatc 14760032  T
Q  255 catgaaattagtc 267  Q
     ||||||||||||    
T  14760031 tatgaaattagtc 14760019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 30747017 - 30746906
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||||||||||||| | | |||||||||||||||| ||||||||| |   ||||| ||||||||| ||||| |   |  |||||||||||||    
T  30747017 agggttaaataagtaaataatcatct-aaatataccaacatttcattttagtcccttcaaaatattccttagatttttgatttctttaaaaattttcatc 30746919  T
Q  255 catgaaattagtc 267  Q
    |||||||||||||    
T  30746918 catgaaattagtc 30746906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 30768468 - 30768357
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||||||||||||| | | |||||||||||||||| ||||||||| |   ||||| ||||||||| ||||| |   |  |||||||||||||    
T  30768468 agggttaaataagtaaataatcatct-aaatataccaacatttcattttagtcccttcaaaatattccttagatttttgatttctttaaaaattttcatc 30768370  T
Q  255 catgaaattagtc 267  Q
    |||||||||||||    
T  30768369 catgaaattagtc 30768357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 268
Target Start/End: Original strand, 35294332 - 35294445
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||| ||||| ||||  ||||||||| ||||||||||||||||||   | ||||| || || || |||||||||  ||||||| ||| |||     
T  35294332 agggttaaataattaaatgatccctttaaatatatcaacatttgattttagtccatcgaaaatatttctgaggcttttggtccctccaaaattttacatt 35294431  T
Q  255 catgaaattagtct 268  Q
    ||||||||||||||    
T  35294432 catgaaattagtct 35294445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 20171415 - 20171468
Alignment:
Q  183 aatataccaacatttgattttagtctcgctaaaattttccttagacttttggtc 236  Q
    ||||||||||||||||||||||||| | ||||||| || |||||||||||||||    
T  20171415 aatataccaacatttgattttagtccctctaaaatatttcttagacttttggtc 20171468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 15393145 - 15393225
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtc 236  Q
    |||||||||||||||||| ||||   ||||||||||| |||| ||||| ||| | ||||||| |||||||| |||||||||    
T  15393145 gggttaaataagtaaatagtcctcacaaatataccaatatttaattttcgtccccctaaaatattccttaggcttttggtc 15393225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 22679336 - 22679448
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||| |||   | |||||| |||||| |||||||| || | ||||||| | | ||||  |||| |||  |||||||| |||||||    
T  22679336 agggttaaataagtaaatagtccctctgaatatatcaacatatgattttaatccccctaaaatatcctttaggttttttgtccctccaaaaaatttcatc 22679435  T
Q  255 catgaaattagtc 267  Q
    |||||||||||||    
T  22679436 catgaaattagtc 22679448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 30746773 - 30746883
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||  |||  |||||||||| || ||||||||||||| ||  |||||| ||| ||||  |||| |||  |||||| | ||||||||    
T  30746773 gggttaaataagtaaatggtccccttaaatatactaatatttgattttagtttccttaaaatattctttaggttttttgtccctccaaata-tttcatcc 30746871  T
Q  256 atgaaattagtc 267  Q
    ||||||||||||    
T  30746872 atgaaattagtc 30746883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 30768224 - 30768334
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||  |||  |||||||||| || ||||||||||||| ||  |||||| ||| ||||  |||| |||  |||||| | ||||||||    
T  30768224 gggttaaataagtaaatggtccccttaaatatactaatatttgattttagtttccttaaaatattctttaggttttttgtccctccaaata-tttcatcc 30768322  T
Q  256 atgaaattagtc 267  Q
    ||||||||||||    
T  30768323 atgaaattagtc 30768334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 267
Target Start/End: Complemental strand, 22679580 - 22679471
Alignment:
Q  158 gttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccat 257  Q
    ||||||||||||||  ||||   ||||||||||||||||||||||||||| | ||||||| ||  ||||  ||||||||  || |||  |||||||||||    
T  22679580 gttaaataagtaaacgatccccctaaatataccaacatttgattttagtccctctaaaatatttgttaggtttttggtccctctaaattttttcatccat 22679481  T
Q  258 gaaattagtc 267  Q
     ||| |||||    
T  22679480 taaactagtc 22679471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 30749197 - 30749148
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgatttta 204  Q
    ||||||||||| ||||||||||||  |||||||| |||||||||||||||    
T  30749197 agggttaaatacgtaaataatcctcctaaatatatcaacatttgatttta 30749148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 204
Target Start/End: Complemental strand, 30770648 - 30770599
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgatttta 204  Q
    ||||||||||| ||||||||||||  |||||||| |||||||||||||||    
T  30770648 agggttaaatacgtaaataatcctcctaaatatatcaacatttgatttta 30770599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 161 - 236
Target Start/End: Original strand, 13765561 - 13765636
Alignment:
Q  161 aaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtc 236  Q
    ||||||||||||||||    ||||||||||||||||||||||||||| |  |||||| ||| ||||  ||||||||    
T  13765561 aaataagtaaataatctccctaaatataccaacatttgattttagtccccataaaatattctttaggtttttggtc 13765636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 155 - 273
Target Start/End: Complemental strand, 16706595 - 16706474
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatatacca---acatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttc 251  Q
    ||||||||||| ||||||| |||   |||||||||||   |||||||||||||||| | ||||||| ||| ||||  ||||||||  || |||| ||| |    
T  16706595 agggttaaatatgtaaatagtccccctaaatataccaccaacatttgattttagtccccctaaaatattctttaggtttttggtccctctaaaattttcc 16706496  T
Q  252 atccatgaaattagtctttgct 273  Q
    ||| || |||||||||| ||||    
T  16706495 atctatcaaattagtctctgct 16706474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 232
Target Start/End: Complemental strand, 39255685 - 39255608
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagactttt 232  Q
    |||||||||||| |||||  |||| |||||| || ||||||||||||||| |  | ||||||| || |||||||||||    
T  39255685 agggttaaataaataaattgtccttttaaatttatcaacatttgattttaattcctctaaaatatttcttagactttt 39255608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 273
Target Start/End: Complemental strand, 8819414 - 8819331
Alignment:
Q  189 ccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagtctttgct 273  Q
    |||||||||||||||||| ||  |||||| ||||||||  |||||| |  ||||||| |||||||| || ||||||||| |||||    
T  8819414 ccaacatttgattttagtatccataaaatattccttaggtttttgg-ccctccaaaatttttcatcaattaaattagtccttgct 8819331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 51900116 - 51900164
Alignment:
Q  158 gttaaataagtaaataatcctattaaatataccaacatttgattttagt 206  Q
    |||||||||||||||  ||||  ||||||| ||||||||||||||||||    
T  51900116 gttaaataagtaaatggtccttctaaatattccaacatttgattttagt 51900164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 17431191 - 17431108
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaatta 264  Q
    |||||||| |||||||||||||||||| | ||||||| ||  |||| |||||||||  ||||||||||||||||||||||||||    
T  17431191 taaatatatcaacatttgattttagtccccctaaaatattttttaggcttttggtccctccaaaaattttcatccatgaaatta 17431108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 28687460 - 28687572
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||| |||||| | ||  |||||||||||||||||| |||||| |||| ||||||| |||||||  |||||||||  || ||||||||||||     
T  28687460 agggttaaatatgtaaatgagccctttaaatataccaacatttaattttaatctctctaaaatattccttatgcttttggtccatctaaaaattttcata 28687559  T
Q  255 catgaaattagtc 267  Q
      |||||||||||    
T  28687560 tgtgaaattagtc 28687572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 235
Target Start/End: Complemental strand, 33752790 - 33752710
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggt 235  Q
    |||||||||||||||||   |||| ||||||||| |||||||||||||||||||| ||||||| ||| |||| ||||||||    
T  33752790 agggttaaataagtaaacggtccttttaaatatatcaacatttgattttagtctccctaaaatattctttaggcttttggt 33752710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 34665235 - 34665123
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||  |  |||||||||||||||||||||||||||||| | ||||||| ||  |||| |||||| || ||| | ||| ||||||     
T  34665235 agggttaaataagtaaatggtaatattaaatataccaacatttgattttagtcaccctaaaatattttttaggcttttgttccttctacaaaatttcatt 34665136  T
Q  255 catgaaattagtc 267  Q
     ||||||||||||    
T  34665135 gatgaaattagtc 34665123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 17430738 - 17430827
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagtcttt 270  Q
    ||||||||||||||||||||||||||| | ||||||| |||||||| |||||| ||  | ||||| ||| ||| || |||||||||||||    
T  17430738 taaatataccaacatttgattttagtccctctaaaatattccttaggcttttgatctcttcaaaattttccattcaagaaattagtcttt 17430827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 53343707 - 53343775
Alignment:
Q  158 gttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttag 226  Q
    |||||||||||||||  |||| |||||||||||||| |||||||||||||||| |||||| || |||||    
T  53343707 gttaaataagtaaatggtcctcttaaatataccaacgtttgattttagtctcgttaaaatatttcttag 53343775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 268
Target Start/End: Original strand, 54164465 - 54164578
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||| || |  |||||||||||||||||||||||||||    |||||| |   |||| |||||||||  || |||| |||||||     
T  54164465 agggttaaataagtaaatagtcgttctaaatataccaacatttgattttagtcctcataaaatatattttaggcttttggtccatctaaaatttttcatt 54164564  T
Q  255 catgaaattagtct 268  Q
     |||||||||||||    
T  54164565 tatgaaattagtct 54164578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 13552917 - 13552821
Alignment:
Q  157 ggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcat 253  Q
    ||||||||||||||||| ||||  |||||||| ||| |||||||||||||| |  |||||| ||  |||| ||||||||| ||| |||| |||||||    
T  13552917 ggttaaataagtaaatagtcctcctaaatatatcaatatttgattttagtccccataaaatattatttaggcttttggtccttctaaaatttttcat 13552821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 54164723 - 54164611
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||| ||    |||||||||||||||||||||||||||||  |||||| ||  ||||  ||| ||||  || |||| |||||||     
T  54164723 agggttaaataagtaaatagtctccctaaatataccaacatttgattttagtctctataaaatattttttaggttttcggtccctctaaaatttttcatt 54164624  T
Q  255 catgaaattagtc 267  Q
     ||||||||||||    
T  54164623 tatgaaattagtc 54164611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 267
Target Start/End: Complemental strand, 28687716 - 28687606
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||| | || ||||||||| |||||||||||||||||  | ||||||| ||  ||||  ||||||||  || |||| ||||||||     
T  28687716 gggttaaataagtaaatagttct-ttaaatatatcaacatttgattttagttactctaaaatattttttagggttttggtccctctaaaatttttcatca 28687618  T
Q  256 atgaaattagtc 267  Q
    || |||||||||    
T  28687617 ataaaattagtc 28687606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 32185283 - 32185341
Alignment:
Q  158 gttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaa 216  Q
    ||||||| |||||||| |||   ||||||||||||||||||||||||||| | ||||||    
T  32185283 gttaaatgagtaaatagtccctctaaatataccaacatttgattttagtccctctaaaa 32185341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 39261887 - 39261818
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttc 251  Q
    ||||||||||||| ||| ||||||||| | ||||||||||||||  |||||| |||  |||||||||||||    
T  39261887 taaatataccaacttttcattttagtccctctaaaattttccttcaacttttagtc-ctccaaaaattttc 39261818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 7395913 - 7395954
Alignment:
Q  225 agacttttggtcattccaaaaattttcatccatgaaattagt 266  Q
    |||||||| ||| |||||||| ||||||||||||||||||||    
T  7395913 agacttttagtccttccaaaatttttcatccatgaaattagt 7395954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 5093022 - 5092974
Alignment:
Q  176 cctattaaatataccaacatttgattttagtctcgctaaaattttcctt 224  Q
    ||||| |||||||||||| ||| ||||||||| | ||||||||||||||    
T  5093022 cctataaaatataccaactttttattttagtccctctaaaattttcctt 5092974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 32186699 - 32186643
Alignment:
Q  180 ttaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtc 236  Q
    |||||||||||||||||| ||||||||  | ||||||| ||| |||| |||||||||    
T  32186699 ttaaatataccaacatttaattttagttcctctaaaatattctttaggcttttggtc 32186643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 13657552 - 13657666
Alignment:
Q  159 ttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatg 258  Q
    |||||||| |||||  |||  |||||||||| ||||||||||||||||  | ||||||| ||| ||||||||||||||  || ||||| ||||||| |||    
T  13657552 ttaaataaataaatggtccctttaaatatacaaacatttgattttagttcctctaaaatattctttagacttttggtctctctaaaaaatttcatctatg 13657651  T
Q  259 aaattagtctttgct 273  Q
    |||||||| ||||||    
T  13657652 aaattagtttttgct 13657666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 155 - 273
Target Start/End: Complemental strand, 25906214 - 25906097
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||||||||| | || |||| ||| |||| |||||||||  | | ||| |||||||     
T  25906214 agggttaaataagtaaataatcctcctaaatatatcaacatttgattttagtcccccttaaatattctttaggcttttggtccct-ctaaatttttcatt 25906116  T
Q  255 catgaaattagtctttgct 273  Q
     ||||||||||||| ||||    
T  25906115 tatgaaattagtctctgct 25906097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 15773798 - 15773715
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaatta 264  Q
    ||||||||| |||| |||||||||||||  ||||||| | |||||| |||||||||  |||||||| |||||||||||||||||    
T  15773798 taaatatactaacaattgattttagtcttcctaaaatatcccttaggcttttggtccctccaaaaaatttcatccatgaaatta 15773715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 267
Target Start/End: Original strand, 25905959 - 25906069
Alignment:
Q  157 ggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcca 256  Q
    |||||||||||||||| ||||  ||| |||||||||||||||||||||||| | ||||| | || | ||| |||||||||  || |||| |||||||| |    
T  25905959 ggttaaataagtaaatgatccccttatatataccaacatttgattttagtccccctaaagtatttcataggcttttggtccctctaaaatttttcatcta 25906058  T
Q  257 tgaaattagtc 267  Q
    | |||||||||    
T  25906059 taaaattagtc 25906069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 264
Target Start/End: Original strand, 6843081 - 6843190
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||| |||||| ||   |||||||||| |||||||||||||||||   ||| ||| ||||||||| ||||||||  || |||| ||||||||    
T  6843081 agggttaaataaataaatagtctctttaaatatacaaacatttgattttagtcctcctagaatattccttagatttttggtccctctaaaatttttcatc 6843180  T
Q  255 catgaaatta 264  Q
     |||||||||    
T  6843181 tatgaaatta 6843190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 13657806 - 13657694
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||| |||| | |||||||| |||||||||||||||| |  ||||||| ||  || | |||||| ||  || ||||||||||||     
T  13657806 agggttaaataagtaaatagtcctctgaaatatactaacatttgattttagttttcctaaaatattattttggcttttgttccctctaaaaattttcatg 13657707  T
Q  255 catgaaattagtc 267  Q
     ||||||||||||    
T  13657706 tatgaaattagtc 13657694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 24490693 - 24490804
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||  ||||  ||| ||||||||||||||||||||||||| ||||||| |  ||||   ||||||||  ||||||| || |||||    
T  24490693 agggttaaataagtaaatggtccttctaa-tataccaacatttgattttagtctctctaaaatatctcttaagtttttggtccctccaaaatttctcatc 24490791  T
Q  255 catgaaattagtc 267  Q
     ||||||||||||    
T  24490792 tatgaaattagtc 24490804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 2344720 - 2344603
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||| ||||  |||||| |||||||||| ||||||||  | |||| || |||||||| |||||||||  |  |||| |||| ||||    
T  2344720 gggttaaataagtaaatagtcctcctaaatagaccaacattttattttagttcctctaacatattccttagtcttttggtccctttaaaattttttatcc 2344621  T
Q  256 atgaaattagtctttgct 273  Q
    || |||||| ||| ||||    
T  2344620 attaaattaatctctgct 2344603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 29673290 - 29673342
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtc 207  Q
    ||||||||||||||||||  |||  ||||||||||||||||||||||||||||    
T  29673290 agggttaaataagtaaatggtccccttaaatataccaacatttgattttagtc 29673342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 273
Target Start/End: Complemental strand, 17048111 - 17047994
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||||| ||| ||||  |||||||||||||||||||| ||||||| | ||||||  ||  |||| ||||||||   || ||||| |||||||    
T  17048111 agggttaaataagtgaatgatccccttaaatataccaacatttga-tttagtccccctaaaagattttttaggcttttggttcctctaaaaaatttcatc 17048013  T
Q  255 catgaaattagtctttgct 273  Q
     || |||||||||| ||||    
T  17048012 tattaaattagtctctgct 17047994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 266
Target Start/End: Original strand, 12272527 - 12272611
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagt 266  Q
    ||||||||||||||||||||||||||||| |||||||  |  ||||  ||||| || ||  ||||| |||||||||||||||||||    
T  12272527 taaatataccaacatttgattttagtctctctaaaataatttttaggtttttgatcctt-aaaaaaatttcatccatgaaattagt 12272611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 267
Target Start/End: Original strand, 22297764 - 22297873
Alignment:
Q  158 gttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccat 257  Q
    |||||||||||||||| |||   |||||||| |||||||||||||||||| | ||||||| ||  ||||  ||||||||  |  |||| || ||||| ||    
T  22297764 gttaaataagtaaatagtccctctaaatatatcaacatttgattttagtccctctaaaatattttttaggtttttggtccctttaaaatttctcatctat 22297863  T
Q  258 gaaattagtc 267  Q
    ||||||||||    
T  22297864 gaaattagtc 22297873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 38299200 - 38299120
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtc 236  Q
    |||||||||||||||||| |    ||||||||||||| ||| |||||||||  | ||||||||||| |||| |||||||||    
T  38299200 gggttaaataagtaaatattttccttaaatataccaatattcgattttagttcctctaaaattttctttaggcttttggtc 38299120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 265
Target Start/End: Complemental strand, 20510552 - 20510442
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||| ||||||||| ||||  ||||||||  ||||||||||||||||| |  |||||| ||  |||| |||||| ||  || ||| | ||||||     
T  20510552 agggttaaaaaagtaaatagtcctcataaatatataaacatttgattttagtcccattaaaatattttttaggcttttgatccctctaaacaatttcatt 20510453  T
Q  255 catgaaattag 265  Q
    |||||||||||    
T  20510452 catgaaattag 20510442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 33626057 - 33626007
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttag 205  Q
    |||||||||||||||||| |||||  |||||||| ||| ||||||||||||    
T  33626057 agggttaaataagtaaatgatcctcctaaatatatcaatatttgattttag 33626007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 264
Target Start/End: Original strand, 38900222 - 38900330
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||  |||   |||||||||||| |||| ||||||||||| ||||||| ||  |||  ||||||||    ||||||| ||||||     
T  38900222 agggttaaataagtaaattttccctctaaatataccaatattttattttagtctc-ctaaaatattttttatgcttttggttccaccaaaaaatttcatt 38900320  T
Q  255 catgaaatta 264  Q
    ||||||||||    
T  38900321 catgaaatta 38900330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 264
Target Start/End: Complemental strand, 8086765 - 8086685
Alignment:
Q  184 atataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaatta 264  Q
    |||||| || ||||||||||| || | ||||||| ||  ||||| ||||||||  || |||| ||||||||||||||||||    
T  8086765 atatacaaatatttgattttaatccccctaaaatattttttagatttttggtccctcaaaaagttttcatccatgaaatta 8086685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 17047880 - 17047972
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagtctttgct 273  Q
    |||||||||||| |||||||||||| |   ||||||| ||| ||| ||||||||||  || |||| |||||||  ||||| ||||||| ||||    
T  17047880 taaatataccaatatttgattttagccctcctaaaatattctttaaacttttggtccctctaaaatttttcatttatgaagttagtctctgct 17047972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 155 - 264
Target Start/End: Original strand, 12289979 - 12290088
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||| ||    ||||||||||||||||||||||||| ||  ||||||| |||| |||  ||||| ||  | ||||||||||||||    
T  12289979 agggttaaataagtaaatagtctccctaaatataccaacatttgattttagcctgcctaaaatattccctaggtttttgatcccttcaaaaattttcatc 12290078  T
Q  255 catgaaatta 264  Q
    ||||||||||    
T  12290079 catgaaatta 12290088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 158 - 252
Target Start/End: Original strand, 13340445 - 13340539
Alignment:
Q  158 gttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttca 252  Q
    |||||||||||||||| |||  |||||||||||||||||||||||||||| |  |||||  ||| |||| |||||||||  ||||||| ||||||    
T  13340445 gttaaataagtaaatagtccccttaaatataccaacatttgattttagtccctataaaacattctttaggcttttggtccctccaaaatttttca 13340539  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 31298981 - 31298868
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||| |||  ||||||||||||| |||||||||||||  | ||||||| ||| |||| |||||| ||  || |||  ||||||||    
T  31298981 agggttaaataagtaaatagtccctttaaatataccaatatttgattttagttcctctaaaatattctttaggcttttgctccctctaaattttttcatc 31298882  T
Q  255 catgaaattagtct 268  Q
     | |||||||||||    
T  31298881 tacgaaattagtct 31298868  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 264
Target Start/End: Original strand, 6190568 - 6190676
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||| ||||||||| |||    |||||||| |||||||||||||||||||| || |||| || |||||  |||||||| || |||||| ||| |||    
T  6190568 agggttaactaagtaaatgatctccctaaatatatcaacatttgattttagtctc-cttaaatatttcttaggtttttggtcttttcaaaaaattttatc 6190666  T
Q  255 catgaaatta 264  Q
    ||||||||||    
T  6190667 catgaaatta 6190676  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 34637425 - 34637541
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||| ||    ||||||||||||||||||||||||||| | ||||||| ||| | ||||||||||||  |  |||||  |||||      
T  34637425 gggttaaataagtaaatagtctccataaatataccaacatttgattttagtc-ccctaaaatattcttgagacttttggtccctttaaaaaaattcattt 34637523  T
Q  256 atgaaattagtctttgct 273  Q
    ||||||||||||| ||||    
T  34637524 atgaaattagtctatgct 34637541  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 13340700 - 13340588
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||| | ||||| |||  |||||||||| ||||||||||||||||| |  |||||| ||| ||||  ||||||||  || ||||| ||||||     
T  13340700 agggttaaatatgaaaatagtccccttaaatatactaacatttgattttagtccccataaaatattctttaggtttttggtccctctaaaaaatttcatt 13340601  T
Q  255 catgaaattagtc 267  Q
     ||||||||||||    
T  13340600 tatgaaattagtc 13340588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 267
Target Start/End: Original strand, 30519681 - 30519791
Alignment:
Q  156 gggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatcc 255  Q
    |||||||||||||||||  || |  |||||||||||||||||||||||| ||||  |||||| ||  |||   ||||||||  || |||| |||||||||    
T  30519681 gggttaaataagtaaatggtcgt-ctaaatataccaacatttgattttaatctctttaaaatattatttaagtttttggtccctctaaaatttttcatcc 30519779  T
Q  256 atgaaattagtc 267  Q
    ||||||||||||    
T  30519780 atgaaattagtc 30519791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 31298723 - 31298804
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtc 236  Q
    |||||||||||||||||| |||   ||||| |||||||||||| |||||| || | ||||||| || ||||| |||||||||    
T  31298723 agggttaaataagtaaatgatctctttaaaaataccaacatttaattttaatccctctaaaatatttcttaggcttttggtc 31298804  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 33599907 - 33599852
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtc 236  Q
    ||||||||||||| |||  |||||||||| ||||||||||||||  ||||||||||    
T  33599907 taaatataccaacttttcgttttagtctctctaaaattttccttcaacttttggtc 33599852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 267
Target Start/End: Original strand, 24704332 - 24704418
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagtc 267  Q
    |||||||||||| |||||||||||||||| ||||||| ||  |||  |||||||||  || |||| ||| || | ||||||||||||    
T  24704332 taaatataccaatatttgattttagtctccctaaaatattatttatgcttttggtccctctaaaattttccaactatgaaattagtc 24704418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 267
Target Start/End: Complemental strand, 34637681 - 34637569
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    ||||||||||||||||||| ||    |||||||| |||||||||||||||||  | ||||||| ||| | ||  ||||||||  || |||| |||||||     
T  34637681 agggttaaataagtaaatagtcaccctaaatatatcaacatttgattttagttcccctaaaatattcttgaggtttttggtccctctaaaatttttcatt 34637582  T
Q  255 catgaaattagtc 267  Q
     | ||||||||||    
T  34637581 taagaaattagtc 34637569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 267
Target Start/End: Original strand, 30310 - 30421
Alignment:
Q  155 agggttaaataagtaaataatcctattaaatataccaacatttgattttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatc 254  Q
    |||||||||||||| |||  |||   ||||||||| |||||||||||||||||||   ||||| || ||||  |||||||||  || ||||| |||||||    
T  30310 agggttaaataagtgaatggtccccataaatatactaacatttgattttagtctcctaaaaatattacttaagcttttggtc-ctctaaaaaatttcatc 30408  T
Q  255 catgaaattagtc 267  Q
     ||||||||||||    
T  30409 aatgaaattagtc 30421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 175592 - 175548
Alignment:
Q  181 taaatataccaacatttgattttagtctcgctaaaattttcctta 225  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||    
T  175592 taaatataccaactttttattttagtctctctaaaattttcctta 175548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 268
Target Start/End: Original strand, 1650 - 1719
Alignment:
Q  199 attttagtctcgctaaaattttccttagacttttggtcattccaaaaattttcatccatgaaattagtct 268  Q
    ||||||||| | ||||||| ||  |||| |||||||||  | ||||||||||||| ||||||||||||||    
T  1650 attttagtccctctaaaatattaattaggcttttggtcccttcaaaaattttcattcatgaaattagtct 1719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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