View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_high_4 (Length: 551)
Name: NF17487_high_4
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 60 - 536
Target Start/End: Original strand, 49989 - 50463
Alignment:
| Q |
60 |
tagttataagggcaactacaactaatttcatcaacaacnnnnnnnnnnntatgtatgtttttatcattaattttaaaatacaagtacaaaagcttacatc |
159 |
Q |
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| T |
49989 |
tagttataagggcaactacaactaatttcatcaacaacaaaaaaaaaa--atgtatgtttttatcattaattttaaaatacaagtacaaaagcttacatc |
50086 |
T |
|
| Q |
160 |
aatttacattttgtttcttcaaagaatctcgtcagaattgaaagagaggtattgaatttattcatattttatcttgagttacatattttttaacgttcac |
259 |
Q |
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| T |
50087 |
aatttacattttgttttttcaaagaatctcgtcagaactgaaagagaggtattgaatttattcatattttatcttgagttacatattttttaacgttcac |
50186 |
T |
|
| Q |
260 |
ttgatatatgagctatatgatttatattttgtttaatgtctaccttttcatttagggtgcgattctaacttatatttcatacaccgataatctctcaaat |
359 |
Q |
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| T |
50187 |
ttgatatatgagctatatgatttatatgttgtttaatgtctaccttttcatttaaggtgcgattctaacttatatttcatacaccgataatctctcaaat |
50286 |
T |
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| Q |
360 |
atgagtccatttaaacttaagtgtatgttcttcctcaaattaaagtatttannnnnnnatttacatacacttcattgggagtataagaaccaaaccaatg |
459 |
Q |
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| T |
50287 |
atgagtccattcaaacttaagtgtatgttcttcttcaaattaaagtatttatttttttatttacatacacttcattgggagtataagaaccaaaccaatg |
50386 |
T |
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| Q |
460 |
atcatatgaacctaaaaatctaacccaaatcaattaaattaattcgattaccatccatgttcgagtttaacatccat |
536 |
Q |
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| T |
50387 |
atcatatgaacctaaaaatctaacccaaatcaattaaattaattcgattaccatccatgttcgagtttaacatccat |
50463 |
T |
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