View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_high_6 (Length: 498)
Name: NF17487_high_6
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Original strand, 29803285 - 29803748
Alignment:
| Q |
1 |
ggtaagaacctttagaatcttaataaaccactaaaatatactaaaataaaataaagcacttagcatatataggaccaccatgaaaaggcattttctttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29803285 |
ggtaagaacctttagaatcttaataaaccactaaaatatactaaaataaaataaagcacttagcatatataggaccaccatgaaaaggcattttctttgt |
29803384 |
T |
|
| Q |
101 |
tgtctagtgtgaagacagttggcttttcttaagctacatggattgagtattgtttactctatctcattactttccaattatttataagttagttataaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29803385 |
tgtctagtgtgaagacagttggcttttcttaagctatatggattgagtattgtttactctatctcattactttccaattatttataagttagttataaat |
29803484 |
T |
|
| Q |
201 |
aattctttggataaagcaggatataaggaaccgttaatttttaattaatgcaacattgcatattcatatagctaaaattgacttaagtgcacatcaacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29803485 |
aattctttggataaagcaggatataaggaaccgttaatttttaattaatgcaacattgcatattcatatagctaaaattgacttaagtgcacatcaacaa |
29803584 |
T |
|
| Q |
301 |
tccctcattagccatttggttggagaaaaataatacaagtagccaaagaagacaaatatggaagaagtagggatcaaataaatg-----gggtagggtag |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29803585 |
tccctcattagccatttggttggagaaaaataatacaagtagccaaagaagacaaatatggaagaagtagggatcaaataaatggggtagggtagggtag |
29803684 |
T |
|
| Q |
396 |
gtctttgtttgggttgaatttgtgacagatttaattgtgataccattgtttcatatagctgttg |
459 |
Q |
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| T |
29803685 |
gtctttgtttgggttgaatttgtgacagatttaattgtgataccattgtttcatatagctgttg |
29803748 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 59
Target Start/End: Original strand, 28365849 - 28365906
Alignment:
| Q |
2 |
gtaagaacctttagaatcttaataaaccactaaaatatactaaaataaaataaagcac |
59 |
Q |
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|||||| ||||| |||| ||||||||||| ||||||||| |||||||||||||||||| |
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| T |
28365849 |
gtaagagcctttggaattttaataaaccattaaaatataataaaataaaataaagcac |
28365906 |
T |
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