View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17487_low_10 (Length: 432)
Name: NF17487_low_10
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_low_10 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 176 - 432
Target Start/End: Original strand, 43029323 - 43029580
Alignment:
| Q |
176 |
agcttatcgcagctactttttctataacagaaaagacaaataattacttgtattttatagtttaaaatatattactaataaacatgaaaattgacttaat |
275 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43029323 |
agcttatcacagctactttctctataacagaaaagacaaataattacttgtattttatagtttaaaatatattactaataaacatgaaaattgacttaat |
43029422 |
T |
|
| Q |
276 |
tgctttaatactgactcaaactttcaattaatcatct-aatctaataaacactgaactcattcaataatttaacttcacaaatctaaatcaacagaagtc |
374 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43029423 |
tgctttaatactgactcaaactttcaattaatcatctaaatctaataaacactgaactcattcaataatttaacttcacaaatctaaatcaacagaagtc |
43029522 |
T |
|
| Q |
375 |
aacatcttgtgtgctaaaaaagttagcacaaagcgtagaatcaaaggcattaacatta |
432 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43029523 |
gacatcttgtgtgctaaaaaagttagcacaaagcgtagaatcaaaggcattaacatta |
43029580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 43029191 - 43029337
Alignment:
| Q |
12 |
tatactataccaaccattgtttattaatttctaccgacgtgaaaagcagcaacaaagctatttgtatatgtagtatctttgatttatataggaaaagctt |
111 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43029191 |
tatactataccatccattgtttattaatttctaccgacgtgaaaagcagcaagaaagctattggtatatgtagtatctttgatttatattggaaaagctt |
43029290 |
T |
|
| Q |
112 |
agcagtaacattaatggttacttatgcacaacagcttatcacagcta |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43029291 |
agcagtaacattaatggttacttatgcacaacagcttatcacagcta |
43029337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University