View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_low_11 (Length: 429)
Name: NF17487_low_11
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 36676955 - 36676548
Alignment:
| Q |
1 |
cattttattcatcatcatcttccgctttccctcgaaggatagaaataaaattgagtgattgttatgtgtttacctgaagaggaaagagatagagtgaaag |
100 |
Q |
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| T |
36676955 |
cattttattcatcatcatcttccactttccctcgaaggatagaaataaaattgattgattgttatgtgtttacctgaagaggaaagagatagagtgaaag |
36676856 |
T |
|
| Q |
101 |
acatggcactagaagcagtggtttatccacaaacacaagatccttttagttatggaatcaaagatttttacaacttcaacttcaacactctagttgcaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
36676855 |
acatggcactagaagcagtggtttatccacaaacacaagatccttttagttatggaatcaaagatttttacaacttcaacttcaacactcttgttgcaaa |
36676756 |
T |
|
| Q |
201 |
agaacaagaacaagaacaagaacatagatctttcagttttgtagaaaaccaaacagaaaataattgtcctccttatgtagattggaataacaacaatagt |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676755 |
agaacaagaacaag------aacatagatctttcagttttgtagaaaaccaaacagaaaataattgtcctccttatgtagattggaataacaacaatagt |
36676662 |
T |
|
| Q |
301 |
tccactttttcaccaccccatttgaatgaagttcaagaaaccactactgatccaagtagtaatactaataacactcaaaactttcatgcttcaccttctg |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36676661 |
tccactttttcaccaccccatttgaatgaagttcaagaaaccactactgacccaagtagtaatactaataacactcaaaactttcatgcttcaccttctg |
36676562 |
T |
|
| Q |
401 |
tgaacacagttatt |
414 |
Q |
| |
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|||||||||||||| |
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| T |
36676561 |
tgaacacagttatt |
36676548 |
T |
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