View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_low_12 (Length: 427)
Name: NF17487_low_12
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 28331932 - 28331528
Alignment:
| Q |
1 |
ccaatggaaaggggaaaagcgatgaagatataaaccacctccctcaaaaacaaaatagccatgaaccaccaaacacttctactagtggttacctttgcaa |
100 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331932 |
ccaatggaaagggcaaaagcgat-aagatataaactacctccctcaaaaacaaaatagccatgaaccaccaaacacttctactagtggttacctttgcaa |
28331834 |
T |
|
| Q |
101 |
gtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccaccagggccaaacccatttcccataattggaaacat |
200 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331833 |
gtgcaagcattctcatctttattattagaaaagttaaacaaacccaaaattccaccaagcttccaccagggccaaacccatttcccataattggaaacat |
28331734 |
T |
|
| Q |
201 |
cttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatcatgacattaaaactaggaacattaacaaccatagta |
300 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331733 |
cttagaacttggcaaaaacccacacaaggcactcacaaaactctcaaaaacctatggaccaatcatgacattaaaactaggaacattaacaaccatagta |
28331634 |
T |
|
| Q |
301 |
atctcatcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtagtctcggatgcaatttgtgcacttgatcatcaca |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28331633 |
atctcatcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtagtctcggatgcaatttgtgcacttgatcatcaca |
28331534 |
T |
|
| Q |
401 |
aattct |
406 |
Q |
| |
|
|||||| |
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|
| T |
28331533 |
aattct |
28331528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 60 - 406
Target Start/End: Complemental strand, 28321395 - 28321049
Alignment:
| Q |
60 |
catgaaccaccaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaag |
159 |
Q |
| |
|
|||| |||| |||||||||||||||||| || |||||| |||||||| |||||||||||| |||||||||||| || |||||||||||||| ||||| |
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| T |
28321395 |
catggaccatcaaacacttctactagtgatttcctttgtaagtgcaaccattctcatcttcattcttagaaaatcaaaccaaacccaaaattctactaaa |
28321296 |
T |
|
| Q |
160 |
cttccaccagggccaaacccatttcccataattggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggac |
259 |
Q |
| |
|
||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| |
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| T |
28321295 |
cttccaccagggccaaagccacttcccatcattggaaacatcttagaacttggcaaaaatccacacaaggcattaacaaaactctcaaaaatctatggac |
28321196 |
T |
|
| Q |
260 |
caatcatgacattaaaactaggaacattaacaaccatagtaatctcatcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaa |
359 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||| || |||||| ||||||||||||| ||||| || ||||| ||||| || || || |
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| T |
28321195 |
caatcatgacattaaaactaggaagcataacaaccatagtgatctcttccccacaagtagccaaacaagttttacatgacaattctcaaatcttttcaaa |
28321096 |
T |
|
| Q |
360 |
tagagtagtctcggatgcaatttgtgcacttgatcatcacaaattct |
406 |
Q |
| |
|
|||| ||| | ||||||| | |||| |||||||| ||||||||| |
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|
| T |
28321095 |
tagaactgtcccacatgcaatctctgcagttgatcatgacaaattct |
28321049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 68 - 363
Target Start/End: Complemental strand, 28297325 - 28297030
Alignment:
| Q |
68 |
accaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccacc |
167 |
Q |
| |
|
|||||||||||||||||||| |||||| | || ||| |||||||||||| |||||||||||| | | |||||||||||||| ||||| |||||||| |
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| T |
28297325 |
accaaacacttctactagtgattacctctttgtgtacaaccattctcatcttcattcttagaaaattaatccaaacccaaaattctactaaacttccacc |
28297226 |
T |
|
| Q |
168 |
agggccaaacccatttcccataattggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatcatg |
267 |
Q |
| |
|
||||||| ||||| ||||||| || |||||||||||||||||||||||||| ||||| |||||||| |||||||||||| ||| |||||||||||||||| |
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| T |
28297225 |
agggccatacccacttcccatcataggaaacatcttagaacttggcaaaaacccacataaggcactcacaaaactctcacaaaactatggaccaatcatg |
28297126 |
T |
|
| Q |
268 |
acattaaaactaggaacattaacaaccatagtaatctcatcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaataga |
363 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||| ||||| |||||| |||||||||||| ||||| |||||||||||||| |||||||||||| |
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|
| T |
28297125 |
acactaaaactaggaacaataacaaccatagtaatttcatctccacaagtagccaaacaagccttacatgaaaattcccaaatcttctctaataga |
28297030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 68 - 404
Target Start/End: Complemental strand, 28310813 - 28310477
Alignment:
| Q |
68 |
accaaacacttctactagtggttacctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccacc |
167 |
Q |
| |
|
|||||||||||||||| ||| |||||| | |||| |||||||||||||| ||| ||| |||| | || ||||| |||||||| || || |||||||| |
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|
| T |
28310813 |
accaaacacttctactggtgattacctctttgtgtgcgagcattctcatcttcatttttaaaaaattaaaccaaactcaaaattctacaaaacttccacc |
28310714 |
T |
|
| Q |
168 |
agggccaaacccatttcccataattggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatcatg |
267 |
Q |
| |
|
||||||||| ||| ||||||| || |||||||||||| ||||||||||||||||||||| | |||| ||||| |||||||| | |||||||||||| ||| |
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|
| T |
28310713 |
agggccaaaaccacttcccatcataggaaacatcttacaacttggcaaaaatccacacaggacactcacaaatctctcaaacatctatggaccaattatg |
28310614 |
T |
|
| Q |
268 |
acattaaaactaggaacattaacaaccatagtaatctcatcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtag |
367 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||| |||||||||||| | |
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|
| T |
28310613 |
acactaaaactaggaacattaacaaccatagtaatctcatcacctcaactagccaaacaagttttacatgaaaattctcaaatcttctctaatagaactg |
28310514 |
T |
|
| Q |
368 |
tctcggatgcaatttgtgcacttgatcatcacaaatt |
404 |
Q |
| |
|
|| | ||||| ||||||||||||||||| ||||||| |
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|
| T |
28310513 |
tcccacatgcactttgtgcacttgatcatgacaaatt |
28310477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 92 - 406
Target Start/End: Original strand, 28287912 - 28288226
Alignment:
| Q |
92 |
cctttgcaagtgcaagcattctcatctttattcttagaaaagttaaacaaacccaaaattccactaagcttccaccagggccaaacccatttcccataat |
191 |
Q |
| |
|
|||||| |||||||||||| |||||| | |||||||||||| | || ||||| |||||||| || || ||||||||||||||||| ||| ||||||| || |
|
|
| T |
28287912 |
cctttgtaagtgcaagcatcctcatcctcattcttagaaaattaaaccaaactcaaaattctacaaaacttccaccagggccaaagccacttcccatcat |
28288011 |
T |
|
| Q |
192 |
tggaaacatcttagaacttggcaaaaatccacacaaggcacttacaaaactctcaaaaacctatggaccaatcatgacattaaaactaggaacattaaca |
291 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||| | |||| ||||| |||||||| | |||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
28288012 |
aggaaacatcttacaacttggcaaaaacccacacaggacactcacaaatctctcaaacatctatggaccaattatgacactaaaactaggaacattaaca |
28288111 |
T |
|
| Q |
292 |
accatagtaatctcatcaccacaactagccaaacaagtgttacaagaaaattcccaaatattctctaatagagtagtctcggatgcaatttgtgcacttg |
391 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||| ||||| |||||||| ||||| ||||| |||||| ||| | ||||||| |||||||| |
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|
| T |
28288112 |
accatagtaatttcatcaccacaattagccaaacaagttttacatgaaaattctcaaatcttctcaaatagaactgtcccacatgcaatacatgcacttg |
28288211 |
T |
|
| Q |
392 |
atcatcacaaattct |
406 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
28288212 |
atcataacaaattct |
28288226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 329
Target Start/End: Complemental strand, 28336523 - 28336389
Alignment:
| Q |
197 |
acatcttagaacttggcaaaaatccacacaaggcacttacaaaa---ctctcaaaaacctatggaccaatcatgacattaaaactagg-aacattaacaa |
292 |
Q |
| |
|
|||||| ||||||| | ||||| ||||||||| |||| |||||| ||||| |||| ||| ||||||||||||||| ||||||| || ||||| |||| |
|
|
| T |
28336523 |
acatctcagaactttg-aaaaacccacacaagtcactcacaaaaaaactctctaaaatctacggaccaatcatgacactaaaacttggcaacat-aacat |
28336426 |
T |
|
| Q |
293 |
ccatagtaatctcatcaccacaactagccaaacaagt |
329 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
28336425 |
ccatagtaatctcatccccacaactaaccaaacaagt |
28336389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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