View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_low_16 (Length: 396)
Name: NF17487_low_16
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 69 - 379
Target Start/End: Original strand, 42952823 - 42953133
Alignment:
| Q |
69 |
gttgatttatttattaattgtagtagatgtgaaggttagtctgcgatgagtagatgcatcgtcaggacgcgtctcttcttgaatccgcaataactaagtc |
168 |
Q |
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| T |
42952823 |
gttgatttatttattaattgtagtagatgtgaaggttagtctgcgatgagtagatgcatcgtcaggacgcgtctcttcttgaatccgcaataactaagtc |
42952922 |
T |
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| Q |
169 |
aaatccacgtattgctgactcatgcttatcatttttcataattactattaattacattcatatcgtaaattgatttgtcgaaacttaaaatnnnnnnntt |
268 |
Q |
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| T |
42952923 |
aaatccacgtattgctgactcatgcttatcatttttcataattactattaattacattcatatcgtaaattgatttgtcgaaacttaaaataaaaaaatt |
42953022 |
T |
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| Q |
269 |
acttgtcatgtttggaatgaaaaatgtaacagccgtactatatatggtcatggatatatgcacggttttaacctttgtacctcaatattttgtctgtcca |
368 |
Q |
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| T |
42953023 |
acctgtcatgtttggaatgaaaaaggtaaaagccgtactatatatggtcatggatatatgcacggtttcaacctttgtacctcaatattttgtctgtcca |
42953122 |
T |
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| Q |
369 |
taggactatat |
379 |
Q |
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| T |
42953123 |
taggactatat |
42953133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 42952755 - 42952798
Alignment:
| Q |
1 |
tattacataataaattttgttgaaggaacaatagctggttacag |
44 |
Q |
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| T |
42952755 |
tattacataataaattttgttgaaggaacaatagctggttacag |
42952798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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