View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17487_low_21 (Length: 319)

Name: NF17487_low_21
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17487_low_21
NF17487_low_21
[»] chr6 (2 HSPs)
chr6 (5-155)||(34112734-34112884)
chr6 (5-155)||(12470314-12470465)
[»] chr5 (1 HSPs)
chr5 (173-305)||(31192373-31192504)
[»] chr3 (2 HSPs)
chr3 (5-155)||(34306468-34306618)
chr3 (115-158)||(8366222-8366265)
[»] chr7 (3 HSPs)
chr7 (81-156)||(33829827-33829902)
chr7 (81-158)||(37503380-37503456)
chr7 (113-155)||(24857354-24857396)
[»] chr4 (1 HSPs)
chr4 (115-155)||(25267846-25267886)
[»] chr2 (2 HSPs)
chr2 (113-155)||(8078499-8078541)
chr2 (98-155)||(21466414-21466471)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 34112884 - 34112734
Alignment:
Q  5 gagtgagatgaaagtgcagataaaagttgagggtatgcaatnnnnnnnnctaagggggttcatagtgcnnnnnnnntggattattggtgtattttttaaa 104  Q
    ||||||| |||||||||||||||||||||||||||||||||        |||||||| ||||||||||        ||||||||||||||||||||||||    
T  34112884 gagtgagttgaaagtgcagataaaagttgagggtatgcaataaaaaaaactaaggggattcatagtgcaaaaaaaatggattattggtgtattttttaaa 34112785  T
Q  105 agttgagaggatgcatgtgcatcccctaacttgtatgtggctccgccactg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34112784 agttgagaggatgcatgtgcatcccctaacttgtatgtggctccgccactg 34112734  T

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Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 5 - 155
Target Start/End: Complemental strand, 12470465 - 12470314
Alignment:
Q  5 gagtgagatgaaagtgcagataaaagttgagggtatgcaatnnnnnnnnctaagggggttcatagtgcnnnnnnnnt-ggattattggtgtattttttaa 103  Q
    ||||||| |||||||||| ||||| ||||||||||||||||        |||||||||||||||||||        | ||||||||||||||||||| ||    
T  12470465 gagtgagttgaaagtgcaaataaaggttgagggtatgcaataaaaaaaactaagggggttcatagtgcaaaaaaaattggattattggtgtatttttcaa 12470366  T
Q  104 aagttgagaggatgcatgtgcatcccctaacttgtatgtggctccgccactg 155  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  12470365 aagttgagaggatgcatgtgcatcccctgacttgtacgtggctccgccactg 12470314  T

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Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 173 - 305
Target Start/End: Original strand, 31192373 - 31192504
Alignment:
Q  173 tggggttttccccaaacccgcaaccnnnnnnnngcaaaatgttgtttctatcacagacaagaacacacgttgcgcgtagcatcatgagcgccacacatca 272  Q
    |||||||||||||||||||||||||        ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  31192373 tggggttttccccaaacccgcaaccaaaaaaa-gcaaaatgttgtttctaccacagacaagaacacacattgcgcgtggcatcatgagcgccacacatca 31192471  T
Q  273 agtcaaaaacagtacattttgtgcattgttttg 305  Q
    | ||||||||||||||||||||||| |||||||    
T  31192472 aatcaaaaacagtacattttgtgcactgttttg 31192504  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 34306468 - 34306618
Alignment:
Q  5 gagtgagatgaaagtgcagataaaagttgagggtatgcaatnnnnnnnnctaagggggttcatagtgcnnnnnnnntggattattggtgtattttttaaa 104  Q
    ||||||| |||||||| | ||||| ||||||||||||||||        |||||||||||||||||||        |||||||||||||||||||| |||    
T  34306468 gagtgagttgaaagtgtaaataaaggttgagggtatgcaataaaaaaaactaagggggttcatagtgcaaaaaaattggattattggtgtatttttcaaa 34306567  T
Q  105 agttgagaggatgcatgtgcatcccctaacttgtatgtggctccgccactg 155  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  34306568 agttgagaggatgcatgtgcatcccctgacttgtacgtggctccgccactg 34306618  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 8366265 - 8366222
Alignment:
Q  115 atgcatgtgcatcccctaacttgtatgtggctccgccactggtt 158  Q
    |||||| |||||||||| ||||||||||||||||||||||||||    
T  8366265 atgcatctgcatcccctcacttgtatgtggctccgccactggtt 8366222  T

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Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 33829902 - 33829827
Alignment:
Q  81 tggattattggtgtattttttaaaagttgagaggatgcatgtgcatcccctaacttgtatgtggctccgccactgg 156  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  33829902 tggattattggtgtatttttcaaaagttgagaggatgcatgtgcatcccctgacttgtacgtggctccgccactgg 33829827  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 37503456 - 37503380
Alignment:
Q  81 tggattattggtgtattttttaaaagttgagaggatgcatgtgcatcccctaacttgtatgtggctccgccactggtt 158  Q
    ||||||||||||| ||||||  ||||||||| | ||||||||||||||||| ||||||| ||||||||||||||||||    
T  37503456 tggattattggtgcatttttctaaagttgag-gtatgcatgtgcatcccctgacttgtaggtggctccgccactggtt 37503380  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 24857354 - 24857396
Alignment:
Q  113 ggatgcatgtgcatcccctaacttgtatgtggctccgccactg 155  Q
    |||||||| |||||||||| |||||||||||||||||||||||    
T  24857354 ggatgcatctgcatcccctcacttgtatgtggctccgccactg 24857396  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 25267886 - 25267846
Alignment:
Q  115 atgcatgtgcatcccctaacttgtatgtggctccgccactg 155  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  25267886 atgcatttgcatcccctcacttgtatgtggctccgccactg 25267846  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 8078499 - 8078541
Alignment:
Q  113 ggatgcatgtgcatcccctaacttgtatgtggctccgccactg 155  Q
    |||||||| |||||||||| ||||||||||||| |||||||||    
T  8078499 ggatgcatctgcatcccctcacttgtatgtggcaccgccactg 8078541  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 21466471 - 21466414
Alignment:
Q  98 ttttaaaagttgagaggatgcatgtgcatcccctaacttgtatgtggctccgccactg 155  Q
    ||||||||| | || ||||||| ||||||||||| |||| |||||||| |||||||||    
T  21466471 ttttaaaagatcaggggatgcaagtgcatcccctcacttatatgtggcaccgccactg 21466414  T

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