View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_low_25 (Length: 269)
Name: NF17487_low_25
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 5657653 - 5657418
Alignment:
| Q |
15 |
aaaacatggaacattgagttatgaattatgatgtttggtgcatgcattaattaagtgccatagaaactctcaaaactctttgcatatgatggtat-ttgg |
113 |
Q |
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| T |
5657653 |
aaaacatggaacattgagttatgaattatgatgtttggtgcatgcattaattaagtgccatagaaactctcaaaactctttgcatatgatggtatgttgg |
5657554 |
T |
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| Q |
114 |
gagtccattcgaaaatttagggtacacaatgtccttagtgatggagaaattttcttcacctctatactataacttcgaatgtttacttaccagactagat |
213 |
Q |
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| T |
5657553 |
gagtccattcgaaaatttagggtacacaatgtccttagtgatggagaaattttcttcacctctatactataacttcgaatgtttacttaccagactagat |
5657454 |
T |
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| Q |
214 |
aagttatatggtctaaaagtacacatgaaatccctc |
249 |
Q |
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| T |
5657453 |
aaattatgtggtctaaaagtacacatgaaatccctc |
5657418 |
T |
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