View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17487_low_26 (Length: 268)

Name: NF17487_low_26
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17487_low_26
NF17487_low_26
[»] chr5 (12 HSPs)
chr5 (17-245)||(5116057-5116297)
chr5 (188-245)||(2494039-2494096)
chr5 (188-245)||(5628682-5628739)
chr5 (188-245)||(20875840-20875897)
chr5 (188-245)||(25058169-25058226)
chr5 (188-245)||(27821967-27822024)
chr5 (188-245)||(42826353-42826410)
chr5 (188-245)||(5898305-5898362)
chr5 (188-245)||(41555761-41555818)
chr5 (190-244)||(28471216-28471270)
chr5 (190-247)||(29175786-29175843)
chr5 (123-172)||(41335428-41335477)
[»] chr8 (2 HSPs)
chr8 (188-245)||(40846967-40847024)
chr8 (188-245)||(7827948-7828005)
[»] chr7 (5 HSPs)
chr7 (188-245)||(27254422-27254479)
chr7 (188-245)||(27265845-27265902)
chr7 (188-245)||(40756172-40756229)
chr7 (188-243)||(28348432-28348487)
chr7 (188-245)||(26405162-26405219)
[»] chr4 (5 HSPs)
chr4 (188-245)||(43631720-43631777)
chr4 (188-245)||(25596727-25596784)
chr4 (188-245)||(41294774-41294831)
chr4 (188-245)||(35306334-35306391)
chr4 (196-245)||(45069001-45069050)
[»] chr2 (6 HSPs)
chr2 (188-245)||(31669185-31669242)
chr2 (189-246)||(34663382-34663439)
chr2 (188-245)||(4200327-4200384)
chr2 (188-245)||(8291833-8291890)
chr2 (188-245)||(8549740-8549797)
chr2 (188-243)||(7087189-7087244)
[»] chr3 (6 HSPs)
chr3 (188-245)||(21183880-21183937)
chr3 (188-245)||(30894814-30894871)
chr3 (188-245)||(49005560-49005617)
chr3 (188-245)||(51774718-51774775)
chr3 (188-245)||(53142110-53142167)
chr3 (189-247)||(1547193-1547251)
[»] chr1 (5 HSPs)
chr1 (188-245)||(14517442-14517499)
chr1 (188-245)||(48349897-48349954)
chr1 (188-245)||(49913803-49913860)
chr1 (64-158)||(9773133-9773227)
chr1 (188-245)||(27053517-27053574)
[»] chr6 (1 HSPs)
chr6 (188-245)||(7689968-7690025)


Alignment Details
Target: chr5 (Bit Score: 176; Significance: 7e-95; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 5116057 - 5116297
Alignment:
Q  17 tggtaggctcttgtgatccattcactaaacattgcatggacgtgcttaaggaagaagtgggtaaatccaacattcatcaagtcgatcagtttgaccgaga 116  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5116057 tggtaggctcttgtgatccattcactaaacattgcatgcacgcgcttaaggaagaagtgggtaaatccaacattcatcaagtcgatcagtttgaccgaga 5116156  T
Q  117 ggggtttactttctctgtctgtgaaacaatcaactatagagacaaaaggtcaatgaaaactttta------------aggcatggtggtgtgattgtggg 204  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||            |||||||||||||||||||||||    
T  5116157 ggggtttactttctctgtctctgaaacaatcaactatagagacaaaaggccaatgagaacttttaaggtagacctacaggcatggtggtgtgattgtggg 5116256  T
Q  205 gaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
     ||||||||||||||||||||||||||||||||||||||||    
T  5116257 aaatttcaagttttacatatgccttgttcacatgtcatagc 5116297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 2494096 - 2494039
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| | |||||||| |||||||||||    
T  2494096 ggtggtgtgattgtgggaaatttcaagctttacatttaccttgttcccatgtcatagc 2494039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 5628682 - 5628739
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  5628682 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 5628739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 20875897 - 20875840
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  20875897 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 20875840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 25058226 - 25058169
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  25058226 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 25058169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 27821967 - 27822024
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  27821967 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 27822024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 42826410 - 42826353
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  42826410 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 42826353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 5898305 - 5898362
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| | || ||||| |||||||||||    
T  5898305 ggtggtgtgattgtgggaaatttcaagctttacattttccatgttctcatgtcatagc 5898362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 41555818 - 41555761
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||  ||||||||| ||||||| |||| ||||| |||||||||||    
T  41555818 ggtggtgtgattgtggaaaatttcaagctttacatttgccatgttctcatgtcatagc 41555761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 28471270 - 28471216
Alignment:
Q  190 tggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatag 244  Q
    ||||||||||||||  ||| ||||| ||||||| |||||||||| ||||||||||    
T  28471270 tggtgtgattgtggaaaatatcaagctttacatttgccttgttcccatgtcatag 28471216  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 247
Target Start/End: Original strand, 29175786 - 29175843
Alignment:
Q  190 tggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagctg 247  Q
    |||||||||||||| |||||||| |  ||||||   ||||||||||||||||||||||    
T  29175786 tggtgtgattgtggtgaatttcaggcattacattacccttgttcacatgtcatagctg 29175843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 41335477 - 41335428
Alignment:
Q  123 tactttctctgtctgtgaaacaatcaactatagagacaaaaggtcaatga 172  Q
    ||||||||||||||||||||||||||| ||||| ||   |||||||||||    
T  41335477 tactttctctgtctgtgaaacaatcaaatatagggagggaaggtcaatga 41335428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 40846967 - 40847024
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||    
T  40846967 ggtggtgtgattgtgggaaatttcaagctttacatttgccttgttcccatgtcatagc 40847024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 7828005 - 7827948
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  7828005 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 7827948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 27254422 - 27254479
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||    
T  27254422 ggtggtgtgattgtgggaaatttcaagctttacatttgccttgttcccatgtcatagc 27254479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 27265845 - 27265902
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||| ||| ||||||| |||||||||| |||||||||||    
T  27265845 ggtggtgtgattgtgggaaattttaagctttacatttgccttgttcccatgtcatagc 27265902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 40756172 - 40756229
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  40756172 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 40756229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 28348432 - 28348487
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcata 243  Q
    ||||||||||||||| | ||||||||| ||||||| |||| ||||| |||||||||    
T  28348432 ggtggtgtgattgtgcgaaatttcaagctttacatttgccatgttctcatgtcata 28348487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 26405162 - 26405219
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| | || ||||| ||||| |||||    
T  26405162 ggtggtgtgattgtgggaaatttcaagctttacattttccatgttctcatgttatagc 26405219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 43631777 - 43631720
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||    
T  43631777 ggtggtgtgattgtgggaaatttcaagttttagatttgccttgttcccatgtcatagc 43631720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 25596727 - 25596784
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||| |||| ||||||    
T  25596727 ggtggtgtgattgtgggaaatttcaagctttacatttgccttgttcccatggcatagc 25596784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 41294831 - 41294774
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||  ||||||||| ||||||| |||||||||| |||||||||||    
T  41294831 ggtggtgtgattgtggaaaatttcaagctttacatttgccttgttcccatgtcatagc 41294774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 35306391 - 35306334
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    |||| |||||||||||| ||||||||| ||||||| |||||||||  |||||||||||    
T  35306391 ggtgatgtgattgtgggaaatttcaagctttacatctgccttgtttccatgtcatagc 35306334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 45069050 - 45069001
Alignment:
Q  196 gattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||  ||||||||| ||||||| ||||||||||||||||| ||||    
T  45069050 gattgtggaaaatttcaagctttacatgtgccttgttcacatgtcttagc 45069001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 31669185 - 31669242
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||    
T  31669185 ggtggtgtgattgtgggaaatttcaagctttacatttgccttgttcccatgtcatagc 31669242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 34663382 - 34663439
Alignment:
Q  189 gtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagct 246  Q
    |||||||||||||||| ||||||| | ||| |||||||||||||||||||| ||||||    
T  34663382 gtggtgtgattgtgggaaatttcaggctttccatatgccttgttcacatgttatagct 34663439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 4200327 - 4200384
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| | |||||||||    
T  4200327 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcttgtcatagc 4200384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 8291833 - 8291890
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||| | ||||||||| ||||||| |||| ||||| |||||||||||    
T  8291833 ggtggtgtgattgtgagaaatttcaagctttacatttgccatgttcccatgtcatagc 8291890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 8549740 - 8549797
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| | ||| |||||||||||    
T  8549740 ggtggtgtgattgtgggaaatttcaagctttacatttgccatattctcatgtcatagc 8549797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 243
Target Start/End: Complemental strand, 7087244 - 7087189
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcata 243  Q
    ||||||||||||||||| | ||||||| ||||||| |||| ||||| |||||||||    
T  7087244 ggtggtgtgattgtgggaagtttcaagctttacatttgccatgttcccatgtcata 7087189  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 21183880 - 21183937
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  21183880 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 21183937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 30894814 - 30894871
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  30894814 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 30894871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 49005560 - 49005617
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  49005560 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 49005617  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Complemental strand, 51774775 - 51774718
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  51774775 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 51774718  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 53142110 - 53142167
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  53142110 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 53142167  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 1547193 - 1547251
Alignment:
Q  189 gtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagctg 247  Q
    |||||||||||||||| |||||||   ||| |||| |||||||||||||||||||||||    
T  1547193 gtggtgtgattgtgggaaatttcagactttccataagccttgttcacatgtcatagctg 1547251  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 14517442 - 14517499
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  14517442 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 14517499  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 48349897 - 48349954
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||| ||||||||| ||||||| |||| ||||| |||||||||||    
T  48349897 ggtggtgtgattgtgggaaatttcaagctttacatttgccatgttctcatgtcatagc 48349954  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 49913803 - 49913860
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||||  ||||||||| ||||||| |||||||||| |||||||||||    
T  49913803 ggtggtgtgattgtggaaaatttcaagctttacatttgccttgttcccatgtcatagc 49913860  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 9773227 - 9773133
Alignment:
Q  64 aaggaagaagtgggtaaatccaacattcatcaagtcgatcagtttgaccgagaggggtttactttctctgtctgtgaaacaatcaactatagaga 158  Q
    |||||||| |||||||| ||||||| ||| ||||| || || || || |||||| | |||||||| |||  ||||||||||| ||||||| ||||    
T  9773227 aaggaagacgtgggtaagtccaacactcaccaagttgaacaattcgatcgagagagatttactttttcttcctgtgaaacaaccaactatggaga 9773133  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 27053517 - 27053574
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||| | ||| ||||| ||||||| || ||||||| |||||||||||    
T  27053517 ggtggtgtgattgtgcgaaatatcaagctttacatttgtcttgttcccatgtcatagc 27053574  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 7689968 - 7690025
Alignment:
Q  188 ggtggtgtgattgtggggaatttcaagttttacatatgccttgttcacatgtcatagc 245  Q
    ||||||||||||||| | ||||||||| ||||||| |||| ||||| |||||||||||    
T  7689968 ggtggtgtgattgtgagaaatttcaagctttacatttgccatgttctcatgtcatagc 7690025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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