View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17487_low_28 (Length: 251)
Name: NF17487_low_28
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 17837963 - 17838186
Alignment:
| Q |
17 |
aagtttaagtagaaaaatattgtacgtatgattatcatcaatgtgatatttcatttagaccgattggcttgaagtgtggacaaccatactattttgagta |
116 |
Q |
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| T |
17837963 |
aagtttaagtagaaaaatattgtacgtatgattatcatcaatgtgatatttcatttagatcgattggcttgaagtgtggacaaccatactattttgagta |
17838062 |
T |
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| Q |
117 |
gaaaatgcaaaagttaactacatcgccagagaggtaaaattattttctgtatttcttgccatttattaaggggtgttattgtgttcttgtaactttaaat |
216 |
Q |
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| T |
17838063 |
gaaaatgcaaaagttaactacatcgccagagaggtaaaattattttctgtatttcttgtcatttaataaggggtgttattgtgttcttgtaactttaaat |
17838162 |
T |
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| Q |
217 |
gattatatgaattttaatcaatta |
240 |
Q |
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| T |
17838163 |
gattatatgaattttaatcaatta |
17838186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 17850095 - 17850135
Alignment:
| Q |
200 |
ttcttgtaactttaaatgattatatgaattttaatcaatta |
240 |
Q |
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| T |
17850095 |
ttcttgtaactttaaatgattatatgaattttactcaatta |
17850135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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