View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17487_low_3 (Length: 562)
Name: NF17487_low_3
Description: NF17487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17487_low_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 413330 - 413018
Alignment:
| Q |
1 |
atgtggtgcatatattccgaatggatggatagtgcaaacaatgaaaactggactcgacacgtatgtatctatatctagaggccagtgttacatcaaatta |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
413330 |
atgtggtgcatatattcctaatggatggatggtgcaaacaatgaaaactggactcgacacgtatatatctatatctagaggccagtgttacatcaaatta |
413231 |
T |
|
| Q |
101 |
tcattaatggtaagcctgacattttcaagtttttctgaaaggatggatatttcttcatcaatactatttagttttagttcactgttcgaatctggatata |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||| |
|
|
| T |
413230 |
tcattaatggtaagcctgccattttcaagtttttctgaaaggatggatatttcttaatc---actatt------------actgttcgaatctggatata |
413146 |
T |
|
| Q |
201 |
gatagacagcttttgtcgcaattatagacagcaattcatgctccgtacttccgtcatcgatttatgttatacaatttagtactcctaagctaaatcactg |
300 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
413145 |
gataaacagcttttgtcgcaattatagacaacaattcatgctccgtacttccgtcatcgatttatgttatacaatttagtcctcttaagctaaatcactg |
413046 |
T |
|
| Q |
301 |
cctaattaacttggaggcatatctattt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
413045 |
cctaattaacttggaggcatatctattt |
413018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 451 - 558
Target Start/End: Complemental strand, 412121 - 412011
Alignment:
| Q |
451 |
taaagtgaaaactcattttagtccttaacaccgactagaagactcaatttggtcaacgaaatagaactttaagtccatgacaa---aaaaggggacaact |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
412121 |
taaagtgaaaactcattttagtccttaacaacgactagaagactcaatttggtcaacgaaatataactttaagtccatgacaaaaaaaaaggggacaact |
412022 |
T |
|
| Q |
548 |
tatctgtgctc |
558 |
Q |
| |
|
|||| |||||| |
|
|
| T |
412021 |
tatccgtgctc |
412011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 355 - 383
Target Start/End: Complemental strand, 412501 - 412473
Alignment:
| Q |
355 |
tatctaattatgatatcttacgagcaagc |
383 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
412501 |
tatctaattatgatatcttacgagcaagc |
412473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University